Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS08240 and LU632_RS08245 are separated by 128 nucleotides LU632_RS08245 and tehB overlap by 51 nucleotides tehB and ppx overlap by 4 nucleotides ppx and ppk1 are separated by 6 nucleotides
LU632_RS08240: LU632_RS08240 - YfgG family protein, at 1,550,492 to 1,550,659
_RS08240
LU632_RS08245: LU632_RS08245 - hypothetical protein, at 1,550,788 to 1,551,042
_RS08245
LU632_RS08250: tehB - tellurite resistance methyltransferase TehB, at 1,550,992 to 1,551,597
tehB
LU632_RS08255: ppx - exopolyphosphatase, at 1,551,594 to 1,553,126
ppx
LU632_RS08260: ppk1 - polyphosphate kinase 1, at 1,553,133 to 1,555,193
ppk1
Position (kb) 1551
1552
1553
1554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1550.615 kb on - strand, within LU632_RS08240 at 1550.669 kb on + strand at 1550.670 kb on - strand at 1550.729 kb on - strand at 1550.771 kb on - strand at 1550.862 kb on + strand, within LU632_RS08245 at 1550.863 kb on - strand, within LU632_RS08245 at 1550.897 kb on + strand, within LU632_RS08245 at 1550.931 kb on - strand, within LU632_RS08245 at 1550.933 kb on + strand, within LU632_RS08245 at 1550.934 kb on - strand, within LU632_RS08245 at 1550.958 kb on + strand, within LU632_RS08245 at 1551.085 kb on - strand, within tehB at 1551.094 kb on - strand, within tehB at 1551.122 kb on + strand, within tehB at 1551.150 kb on + strand, within tehB at 1551.212 kb on + strand, within tehB at 1551.312 kb on - strand, within tehB at 1551.418 kb on - strand, within tehB at 1551.459 kb on - strand, within tehB at 1551.511 kb on + strand, within tehB at 1551.716 kb on + strand at 1551.964 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.093 kb on + strand, within ppx at 1552.094 kb on - strand, within ppx at 1552.368 kb on - strand, within ppx at 1552.387 kb on + strand, within ppx at 1552.416 kb on + strand, within ppx at 1552.444 kb on - strand, within ppx at 1552.598 kb on - strand, within ppx at 1552.730 kb on + strand, within ppx at 1552.788 kb on - strand, within ppx at 1553.021 kb on + strand at 1553.021 kb on + strand at 1553.022 kb on - strand at 1553.112 kb on - strand at 1553.118 kb on + strand at 1553.126 kb on + strand at 1553.127 kb on - strand at 1553.162 kb on - strand at 1553.167 kb on + strand at 1553.168 kb on - strand at 1553.349 kb on - strand, within ppk1 at 1553.351 kb on + strand, within ppk1 at 1553.352 kb on - strand, within ppk1 at 1553.352 kb on - strand, within ppk1 at 1553.463 kb on - strand, within ppk1 at 1553.522 kb on + strand, within ppk1 at 1553.522 kb on + strand, within ppk1 at 1553.551 kb on + strand, within ppk1 at 1553.551 kb on + strand, within ppk1 at 1553.552 kb on - strand, within ppk1 at 1553.585 kb on + strand, within ppk1 at 1553.585 kb on + strand, within ppk1 at 1553.590 kb on - strand, within ppk1 at 1553.590 kb on - strand, within ppk1 at 1553.656 kb on + strand, within ppk1 at 1553.735 kb on + strand, within ppk1 at 1553.749 kb on - strand, within ppk1 at 1553.788 kb on + strand, within ppk1 at 1553.925 kb on - strand, within ppk1 at 1554.079 kb on + strand, within ppk1
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,550,615 - LU632_RS08240 0.73 -0.2 1,550,669 + +0.2 1,550,670 - -0.1 1,550,729 - +0.3 1,550,771 - -0.3 1,550,862 + LU632_RS08245 0.29 +0.2 1,550,863 - LU632_RS08245 0.29 +0.5 1,550,897 + LU632_RS08245 0.43 -0.7 1,550,931 - LU632_RS08245 0.56 +0.3 1,550,933 + LU632_RS08245 0.57 +1.0 1,550,934 - LU632_RS08245 0.57 +0.0 1,550,958 + LU632_RS08245 0.67 +0.7 1,551,085 - tehB LU632_RS08250 0.15 -1.0 1,551,094 - tehB LU632_RS08250 0.17 +0.2 1,551,122 + tehB LU632_RS08250 0.21 +2.3 1,551,150 + tehB LU632_RS08250 0.26 -0.4 1,551,212 + tehB LU632_RS08250 0.36 +0.4 1,551,312 - tehB LU632_RS08250 0.53 -1.1 1,551,418 - tehB LU632_RS08250 0.70 -0.7 1,551,459 - tehB LU632_RS08250 0.77 +0.6 1,551,511 + tehB LU632_RS08250 0.86 -0.5 1,551,716 + +0.0 1,551,964 + ppx LU632_RS08255 0.24 +0.0 1,552,093 + ppx LU632_RS08255 0.33 +0.0 1,552,093 + ppx LU632_RS08255 0.33 +0.0 1,552,093 + ppx LU632_RS08255 0.33 -1.0 1,552,093 + ppx LU632_RS08255 0.33 -0.7 1,552,094 - ppx LU632_RS08255 0.33 -1.0 1,552,368 - ppx LU632_RS08255 0.50 +0.0 1,552,387 + ppx LU632_RS08255 0.52 +0.0 1,552,416 + ppx LU632_RS08255 0.54 -1.0 1,552,444 - ppx LU632_RS08255 0.55 -1.4 1,552,598 - ppx LU632_RS08255 0.65 -0.7 1,552,730 + ppx LU632_RS08255 0.74 -2.3 1,552,788 - ppx LU632_RS08255 0.78 +1.2 1,553,021 + +1.6 1,553,021 + -0.6 1,553,022 - +0.0 1,553,112 - -0.4 1,553,118 + +0.0 1,553,126 + -1.7 1,553,127 - -0.7 1,553,162 - +0.0 1,553,167 + -1.8 1,553,168 - +0.0 1,553,349 - ppk1 LU632_RS08260 0.10 +0.0 1,553,351 + ppk1 LU632_RS08260 0.11 +0.0 1,553,352 - ppk1 LU632_RS08260 0.11 -1.0 1,553,352 - ppk1 LU632_RS08260 0.11 +0.0 1,553,463 - ppk1 LU632_RS08260 0.16 +1.0 1,553,522 + ppk1 LU632_RS08260 0.19 +0.0 1,553,522 + ppk1 LU632_RS08260 0.19 -1.6 1,553,551 + ppk1 LU632_RS08260 0.20 +0.0 1,553,551 + ppk1 LU632_RS08260 0.20 -1.0 1,553,552 - ppk1 LU632_RS08260 0.20 +0.0 1,553,585 + ppk1 LU632_RS08260 0.22 +0.0 1,553,585 + ppk1 LU632_RS08260 0.22 +0.3 1,553,590 - ppk1 LU632_RS08260 0.22 +1.6 1,553,590 - ppk1 LU632_RS08260 0.22 +1.6 1,553,656 + ppk1 LU632_RS08260 0.25 +0.0 1,553,735 + ppk1 LU632_RS08260 0.29 +0.0 1,553,749 - ppk1 LU632_RS08260 0.30 +0.0 1,553,788 + ppk1 LU632_RS08260 0.32 +0.0 1,553,925 - ppk1 LU632_RS08260 0.38 +1.0 1,554,079 + ppk1 LU632_RS08260 0.46 +0.8
Or see this region's nucleotide sequence