Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07030 and LU632_RS07035 are separated by 49 nucleotides LU632_RS07035 and LU632_RS07040 overlap by 4 nucleotides LU632_RS07040 and LU632_RS07045 overlap by 26 nucleotides LU632_RS07045 and LU632_RS07050 are separated by 1 nucleotides LU632_RS07050 and LU632_RS07055 overlap by 8 nucleotides
LU632_RS07030: LU632_RS07030 - hypothetical protein, at 1,337,636 to 1,338,196
_RS07030
LU632_RS07035: LU632_RS07035 - recombination protein NinB, at 1,338,246 to 1,338,683
_RS07035
LU632_RS07040: LU632_RS07040 - hypothetical protein, at 1,338,680 to 1,339,069
_RS07040
LU632_RS07045: LU632_RS07045 - hypothetical protein, at 1,339,044 to 1,339,244
_RS07045
LU632_RS07050: LU632_RS07050 - DNA cytosine methyltransferase, at 1,339,246 to 1,340,109
_RS07050
LU632_RS07055: LU632_RS07055 - recombination protein NinG, at 1,340,102 to 1,340,677
_RS07055
Position (kb)
1339
1340 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1338.283 kb on + strand at 1338.347 kb on - strand, within LU632_RS07035 at 1338.490 kb on + strand, within LU632_RS07035 at 1338.707 kb on + strand at 1338.708 kb on - strand at 1338.744 kb on + strand, within LU632_RS07040 at 1338.745 kb on - strand, within LU632_RS07040 at 1338.752 kb on + strand, within LU632_RS07040 at 1338.752 kb on + strand, within LU632_RS07040 at 1338.752 kb on + strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.753 kb on - strand, within LU632_RS07040 at 1338.798 kb on + strand, within LU632_RS07040 at 1338.848 kb on - strand, within LU632_RS07040 at 1338.848 kb on - strand, within LU632_RS07040 at 1338.858 kb on - strand, within LU632_RS07040 at 1338.997 kb on + strand, within LU632_RS07040 at 1339.009 kb on - strand, within LU632_RS07040 at 1339.010 kb on + strand, within LU632_RS07040 at 1339.011 kb on - strand, within LU632_RS07040 at 1339.011 kb on - strand, within LU632_RS07040 at 1339.011 kb on - strand, within LU632_RS07040 at 1339.192 kb on - strand, within LU632_RS07045 at 1339.246 kb on - strand at 1339.258 kb on + strand at 1339.332 kb on - strand at 1339.360 kb on - strand, within LU632_RS07050 at 1339.384 kb on - strand, within LU632_RS07050 at 1339.423 kb on + strand, within LU632_RS07050 at 1339.424 kb on - strand, within LU632_RS07050 at 1339.424 kb on - strand, within LU632_RS07050 at 1339.538 kb on + strand, within LU632_RS07050 at 1339.556 kb on - strand, within LU632_RS07050 at 1339.556 kb on - strand, within LU632_RS07050 at 1339.795 kb on + strand, within LU632_RS07050 at 1339.795 kb on + strand, within LU632_RS07050 at 1339.796 kb on - strand, within LU632_RS07050 at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.086 kb on + strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.087 kb on - strand at 1340.088 kb on + strand at 1340.089 kb on - strand at 1340.102 kb on - strand at 1340.159 kb on + strand at 1340.159 kb on + strand at 1340.209 kb on + strand, within LU632_RS07055 at 1340.212 kb on + strand, within LU632_RS07055 at 1340.212 kb on + strand, within LU632_RS07055
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,338,283 + +0.3 1,338,347 - LU632_RS07035 0.23 -0.4 1,338,490 + LU632_RS07035 0.56 +1.0 1,338,707 + -0.0 1,338,708 - -0.0 1,338,744 + LU632_RS07040 0.16 -0.6 1,338,745 - LU632_RS07040 0.17 -0.0 1,338,752 + LU632_RS07040 0.18 +0.7 1,338,752 + LU632_RS07040 0.18 -0.2 1,338,752 + LU632_RS07040 0.18 +0.4 1,338,753 - LU632_RS07040 0.19 -0.5 1,338,753 - LU632_RS07040 0.19 +0.1 1,338,753 - LU632_RS07040 0.19 -0.0 1,338,753 - LU632_RS07040 0.19 -0.4 1,338,753 - LU632_RS07040 0.19 +0.8 1,338,798 + LU632_RS07040 0.30 +0.6 1,338,848 - LU632_RS07040 0.43 -0.0 1,338,848 - LU632_RS07040 0.43 +2.0 1,338,858 - LU632_RS07040 0.46 +0.6 1,338,997 + LU632_RS07040 0.81 +0.4 1,339,009 - LU632_RS07040 0.84 -1.3 1,339,010 + LU632_RS07040 0.85 -0.6 1,339,011 - LU632_RS07040 0.85 -0.6 1,339,011 - LU632_RS07040 0.85 +0.2 1,339,011 - LU632_RS07040 0.85 -0.3 1,339,192 - LU632_RS07045 0.74 -0.8 1,339,246 - +0.3 1,339,258 + -0.2 1,339,332 - -0.5 1,339,360 - LU632_RS07050 0.13 -0.7 1,339,384 - LU632_RS07050 0.16 +0.8 1,339,423 + LU632_RS07050 0.20 -0.0 1,339,424 - LU632_RS07050 0.21 -0.0 1,339,424 - LU632_RS07050 0.21 +0.4 1,339,538 + LU632_RS07050 0.34 -0.6 1,339,556 - LU632_RS07050 0.36 -0.0 1,339,556 - LU632_RS07050 0.36 -1.6 1,339,795 + LU632_RS07050 0.64 +1.6 1,339,795 + LU632_RS07050 0.64 -0.7 1,339,796 - LU632_RS07050 0.64 -0.0 1,340,086 + -0.3 1,340,086 + -1.3 1,340,086 + +1.0 1,340,086 + +0.1 1,340,086 + -0.0 1,340,086 + +0.2 1,340,086 + -0.0 1,340,086 + +0.5 1,340,086 + -0.2 1,340,087 - +0.1 1,340,087 - +0.3 1,340,087 - -2.0 1,340,087 - +0.2 1,340,087 - +0.6 1,340,087 - -0.2 1,340,087 - -0.5 1,340,087 - +0.6 1,340,088 + -1.0 1,340,089 - +2.0 1,340,102 - +0.3 1,340,159 + +0.0 1,340,159 + +1.0 1,340,209 + LU632_RS07055 0.19 +0.2 1,340,212 + LU632_RS07055 0.19 -0.3 1,340,212 + LU632_RS07055 0.19 -2.0
Or see this region's nucleotide sequence