Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS07015 and LU632_RS07020 overlap by 4 nucleotides LU632_RS07020 and LU632_RS07025 overlap by 4 nucleotides LU632_RS07025 and LU632_RS07030 are separated by 544 nucleotides
LU632_RS07015: LU632_RS07015 - phage antirepressor KilAC domain-containing protein, at 1,334,913 to 1,335,611
_RS07015
LU632_RS07020: LU632_RS07020 - helix-turn-helix domain-containing protein, at 1,335,608 to 1,336,333
_RS07020
LU632_RS07025: LU632_RS07025 - replication protein P, at 1,336,330 to 1,337,091
_RS07025
LU632_RS07030: LU632_RS07030 - hypothetical protein, at 1,337,636 to 1,338,196
_RS07030
Position (kb) 1336
1337
1338 Strain fitness (log2 ratio) -1
0
1 at 1336.823 kb on - strand, within LU632_RS07025 at 1336.908 kb on + strand, within LU632_RS07025 at 1336.908 kb on + strand, within LU632_RS07025 at 1337.048 kb on + strand at 1337.049 kb on - strand at 1337.049 kb on - strand at 1337.050 kb on + strand at 1337.137 kb on + strand at 1337.137 kb on + strand at 1337.160 kb on + strand at 1337.407 kb on - strand at 1337.586 kb on + strand at 1337.604 kb on + strand at 1337.604 kb on + strand at 1337.672 kb on + strand at 1337.746 kb on + strand, within LU632_RS07030 at 1337.921 kb on + strand, within LU632_RS07030 at 1337.921 kb on + strand, within LU632_RS07030 at 1337.921 kb on + strand, within LU632_RS07030 at 1337.922 kb on - strand, within LU632_RS07030 at 1337.922 kb on - strand, within LU632_RS07030
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,336,823 - LU632_RS07025 0.65 +0.1 1,336,908 + LU632_RS07025 0.76 +0.6 1,336,908 + LU632_RS07025 0.76 -0.0 1,337,048 + -1.3 1,337,049 - -0.0 1,337,049 - +0.1 1,337,050 + +0.1 1,337,137 + -0.0 1,337,137 + -1.0 1,337,160 + +0.4 1,337,407 - +1.0 1,337,586 + -0.4 1,337,604 + +0.0 1,337,604 + +0.3 1,337,672 + +0.5 1,337,746 + LU632_RS07030 0.20 -0.2 1,337,921 + LU632_RS07030 0.51 -0.6 1,337,921 + LU632_RS07030 0.51 -0.2 1,337,921 + LU632_RS07030 0.51 +0.0 1,337,922 - LU632_RS07030 0.51 +0.4 1,337,922 - LU632_RS07030 0.51 +1.0
Or see this region's nucleotide sequence