Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xerD and dsbC are separated by 43 nucleotides dsbC and recJ are separated by 5 nucleotides recJ and prfB are separated by 471 nucleotides
LU632_RS05975: xerD - site-specific tyrosine recombinase XerD, at 1,131,587 to 1,132,480
xerD
LU632_RS05980: dsbC - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 1,132,524 to 1,133,228
dsbC
LU632_RS05985: recJ - single-stranded-DNA-specific exonuclease RecJ, at 1,133,234 to 1,134,952
recJ
LU632_RS05990: prfB - peptide chain release factor 2, at 1,135,424 to 1,136,522
prfB
Position (kb) 1133
1134
1135 Strain fitness (log2 ratio) -2
-1
0
1 at 1132.425 kb on - strand at 1132.452 kb on + strand at 1132.452 kb on + strand at 1132.490 kb on - strand at 1132.642 kb on + strand, within dsbC at 1132.642 kb on + strand, within dsbC at 1132.642 kb on + strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.643 kb on - strand, within dsbC at 1132.698 kb on + strand, within dsbC at 1132.698 kb on + strand, within dsbC at 1132.699 kb on - strand, within dsbC at 1132.724 kb on + strand, within dsbC at 1132.748 kb on - strand, within dsbC at 1132.864 kb on + strand, within dsbC at 1132.864 kb on + strand, within dsbC at 1132.868 kb on + strand, within dsbC at 1132.869 kb on - strand, within dsbC at 1132.920 kb on + strand, within dsbC at 1132.921 kb on - strand, within dsbC at 1132.921 kb on - strand, within dsbC at 1132.938 kb on - strand, within dsbC at 1133.003 kb on + strand, within dsbC at 1133.004 kb on - strand, within dsbC at 1133.133 kb on - strand, within dsbC at 1133.164 kb on + strand at 1133.222 kb on + strand at 1133.452 kb on + strand, within recJ at 1133.453 kb on - strand, within recJ at 1133.453 kb on - strand, within recJ at 1133.455 kb on + strand, within recJ at 1133.456 kb on - strand, within recJ at 1133.456 kb on - strand, within recJ at 1133.456 kb on - strand, within recJ at 1133.525 kb on - strand, within recJ at 1133.546 kb on + strand, within recJ at 1133.547 kb on - strand, within recJ at 1133.629 kb on - strand, within recJ at 1134.116 kb on - strand, within recJ at 1134.116 kb on - strand, within recJ at 1134.166 kb on + strand, within recJ at 1134.166 kb on + strand, within recJ at 1134.167 kb on - strand, within recJ at 1134.299 kb on + strand, within recJ at 1134.300 kb on + strand, within recJ at 1134.300 kb on - strand, within recJ at 1134.490 kb on + strand, within recJ at 1134.490 kb on + strand, within recJ at 1134.508 kb on + strand, within recJ at 1134.669 kb on + strand, within recJ at 1134.670 kb on - strand, within recJ at 1134.724 kb on + strand, within recJ at 1134.736 kb on + strand, within recJ at 1134.736 kb on + strand, within recJ at 1134.823 kb on + strand at 1134.924 kb on + strand at 1134.981 kb on - strand at 1135.046 kb on - strand at 1135.061 kb on - strand at 1135.079 kb on - strand at 1135.175 kb on - strand at 1135.243 kb on + strand at 1135.243 kb on + strand at 1135.261 kb on - strand at 1135.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 1,132,425 - +0.0 1,132,452 + +0.0 1,132,452 + +0.0 1,132,490 - -2.0 1,132,642 + dsbC LU632_RS05980 0.17 -0.3 1,132,642 + dsbC LU632_RS05980 0.17 -0.5 1,132,642 + dsbC LU632_RS05980 0.17 +0.6 1,132,643 - dsbC LU632_RS05980 0.17 +0.0 1,132,643 - dsbC LU632_RS05980 0.17 -1.5 1,132,643 - dsbC LU632_RS05980 0.17 +0.4 1,132,643 - dsbC LU632_RS05980 0.17 +0.0 1,132,698 + dsbC LU632_RS05980 0.25 -1.3 1,132,698 + dsbC LU632_RS05980 0.25 -1.1 1,132,699 - dsbC LU632_RS05980 0.25 +0.0 1,132,724 + dsbC LU632_RS05980 0.28 -2.0 1,132,748 - dsbC LU632_RS05980 0.32 -1.0 1,132,864 + dsbC LU632_RS05980 0.48 +0.1 1,132,864 + dsbC LU632_RS05980 0.48 -0.7 1,132,868 + dsbC LU632_RS05980 0.49 -0.3 1,132,869 - dsbC LU632_RS05980 0.49 -0.5 1,132,920 + dsbC LU632_RS05980 0.56 -0.4 1,132,921 - dsbC LU632_RS05980 0.56 +0.0 1,132,921 - dsbC LU632_RS05980 0.56 +0.0 1,132,938 - dsbC LU632_RS05980 0.59 +0.0 1,133,003 + dsbC LU632_RS05980 0.68 -0.5 1,133,004 - dsbC LU632_RS05980 0.68 -1.5 1,133,133 - dsbC LU632_RS05980 0.86 -2.7 1,133,164 + -0.2 1,133,222 + -1.5 1,133,452 + recJ LU632_RS05985 0.13 +0.0 1,133,453 - recJ LU632_RS05985 0.13 -1.0 1,133,453 - recJ LU632_RS05985 0.13 +1.0 1,133,455 + recJ LU632_RS05985 0.13 +0.0 1,133,456 - recJ LU632_RS05985 0.13 -1.0 1,133,456 - recJ LU632_RS05985 0.13 -1.0 1,133,456 - recJ LU632_RS05985 0.13 -1.0 1,133,525 - recJ LU632_RS05985 0.17 +0.0 1,133,546 + recJ LU632_RS05985 0.18 +0.0 1,133,547 - recJ LU632_RS05985 0.18 -0.5 1,133,629 - recJ LU632_RS05985 0.23 -1.0 1,134,116 - recJ LU632_RS05985 0.51 +0.0 1,134,116 - recJ LU632_RS05985 0.51 +0.5 1,134,166 + recJ LU632_RS05985 0.54 -1.5 1,134,166 + recJ LU632_RS05985 0.54 -1.0 1,134,167 - recJ LU632_RS05985 0.54 -1.0 1,134,299 + recJ LU632_RS05985 0.62 -1.5 1,134,300 + recJ LU632_RS05985 0.62 -1.0 1,134,300 - recJ LU632_RS05985 0.62 -1.0 1,134,490 + recJ LU632_RS05985 0.73 -1.0 1,134,490 + recJ LU632_RS05985 0.73 -1.0 1,134,508 + recJ LU632_RS05985 0.74 +0.6 1,134,669 + recJ LU632_RS05985 0.83 -1.0 1,134,670 - recJ LU632_RS05985 0.84 -2.0 1,134,724 + recJ LU632_RS05985 0.87 +0.0 1,134,736 + recJ LU632_RS05985 0.87 +0.0 1,134,736 + recJ LU632_RS05985 0.87 +1.0 1,134,823 + -1.5 1,134,924 + -2.0 1,134,981 - -0.3 1,135,046 - +0.4 1,135,061 - -0.3 1,135,079 - +1.0 1,135,175 - -0.4 1,135,243 + +0.5 1,135,243 + -1.0 1,135,261 - +0.9 1,135,360 + +0.0
Or see this region's nucleotide sequence