Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS05110 and LU632_RS05115 are separated by 164 nucleotides LU632_RS05115 and LU632_RS05120 overlap by 1 nucleotides LU632_RS05120 and LU632_RS05125 are separated by 38 nucleotides LU632_RS05125 and LU632_RS05130 are separated by 12 nucleotides LU632_RS05130 and LU632_RS05135 overlap by 4 nucleotides
LU632_RS05110: LU632_RS05110 - type VI secretion system tube protein Hcp, at 993,494 to 993,958
_RS05110
LU632_RS05115: LU632_RS05115 - hypothetical protein, at 994,123 to 994,470
_RS05115
LU632_RS05120: LU632_RS05120 - TIGR03758 family integrating conjugative element protein, at 994,470 to 994,712
_RS05120
LU632_RS05125: LU632_RS05125 - TIGR03745 family integrating conjugative element membrane protein, at 994,751 to 995,131
_RS05125
LU632_RS05130: LU632_RS05130 - TIGR03750 family conjugal transfer protein, at 995,144 to 995,500
_RS05130
LU632_RS05135: LU632_RS05135 - TIGR03746 family integrating conjugative element protein, at 995,497 to 996,168
_RS05135
Position (kb) 994
995
996 Strain fitness (log2 ratio) -2
-1
0
1
2 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.817 kb on - strand, within LU632_RS05110 at 993.873 kb on + strand, within LU632_RS05110 at 994.122 kb on + strand at 994.122 kb on + strand at 994.123 kb on - strand at 994.435 kb on + strand, within LU632_RS05115 at 994.435 kb on + strand, within LU632_RS05115 at 994.436 kb on - strand at 994.436 kb on - strand at 994.450 kb on + strand at 994.503 kb on - strand, within LU632_RS05120 at 994.685 kb on + strand, within LU632_RS05120 at 994.716 kb on + strand at 994.716 kb on + strand at 994.717 kb on - strand at 994.750 kb on + strand at 994.751 kb on - strand at 994.769 kb on - strand at 994.978 kb on + strand, within LU632_RS05125 at 995.093 kb on - strand, within LU632_RS05125 at 995.464 kb on + strand, within LU632_RS05130 at 995.497 kb on - strand at 995.633 kb on - strand, within LU632_RS05135 at 995.636 kb on - strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.698 kb on + strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.714 kb on - strand, within LU632_RS05135 at 995.761 kb on + strand, within LU632_RS05135 at 995.914 kb on + strand, within LU632_RS05135 at 995.915 kb on - strand, within LU632_RS05135 at 995.934 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.986 kb on + strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135 at 995.987 kb on - strand, within LU632_RS05135
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 993,817 - LU632_RS05110 0.69 +0.0 993,817 - LU632_RS05110 0.69 +1.0 993,817 - LU632_RS05110 0.69 +0.0 993,817 - LU632_RS05110 0.69 -0.6 993,817 - LU632_RS05110 0.69 +1.0 993,817 - LU632_RS05110 0.69 -0.2 993,873 + LU632_RS05110 0.82 -1.2 994,122 + +0.5 994,122 + +0.0 994,123 - -0.4 994,435 + LU632_RS05115 0.90 +1.4 994,435 + LU632_RS05115 0.90 -0.4 994,436 - +2.0 994,436 - +0.0 994,450 + +0.3 994,503 - LU632_RS05120 0.14 +0.0 994,685 + LU632_RS05120 0.88 -2.3 994,716 + -1.6 994,716 + +0.2 994,717 - +0.4 994,750 + +0.0 994,751 - -0.2 994,769 - +2.0 994,978 + LU632_RS05125 0.60 -0.5 995,093 - LU632_RS05125 0.90 -0.8 995,464 + LU632_RS05130 0.90 -0.2 995,497 - +1.0 995,633 - LU632_RS05135 0.20 +0.0 995,636 - LU632_RS05135 0.21 +0.1 995,698 + LU632_RS05135 0.30 +0.6 995,698 + LU632_RS05135 0.30 -0.5 995,714 - LU632_RS05135 0.32 +0.4 995,714 - LU632_RS05135 0.32 +0.0 995,761 + LU632_RS05135 0.39 +1.0 995,914 + LU632_RS05135 0.62 +0.0 995,915 - LU632_RS05135 0.62 -0.7 995,934 + LU632_RS05135 0.65 +2.0 995,986 + LU632_RS05135 0.73 +0.0 995,986 + LU632_RS05135 0.73 -1.0 995,986 + LU632_RS05135 0.73 -1.6 995,987 - LU632_RS05135 0.73 -0.2 995,987 - LU632_RS05135 0.73 +0.0
Or see this region's nucleotide sequence