Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hcp and LU632_RS04800 are separated by 345 nucleotides LU632_RS04800 and LU632_RS04805 are separated by 142 nucleotides LU632_RS04805 and LU632_RS04810 are separated by 497 nucleotides LU632_RS04810 and LU632_RS04815 are separated by 31 nucleotides
LU632_RS04795: hcp - type VI secretion system tube protein Hcp, at 940,810 to 941,301
hcp
LU632_RS04800: LU632_RS04800 - hypothetical protein, at 941,647 to 941,796
_RS04800
LU632_RS04805: LU632_RS04805 - hypothetical protein, at 941,939 to 942,214
_RS04805
LU632_RS04810: LU632_RS04810 - hypothetical protein, at 942,712 to 942,975
_RS04810
LU632_RS04815: LU632_RS04815 - IS1 family transposase, at 943,007 to 943,111
_RS04815
Position (kb) 941
942
943 Strain fitness (log2 ratio) -2
-1
0
1
2 at 941.351 kb on + strand at 941.379 kb on - strand at 941.435 kb on - strand at 941.511 kb on - strand at 941.515 kb on - strand at 941.659 kb on - strand at 941.664 kb on - strand, within LU632_RS04800 at 941.669 kb on + strand, within LU632_RS04800 at 941.670 kb on - strand, within LU632_RS04800 at 941.722 kb on + strand, within LU632_RS04800 at 941.799 kb on + strand at 941.800 kb on - strand at 941.880 kb on + strand at 941.953 kb on + strand at 942.000 kb on + strand, within LU632_RS04805 at 942.000 kb on + strand, within LU632_RS04805 at 942.027 kb on + strand, within LU632_RS04805 at 942.073 kb on - strand, within LU632_RS04805 at 942.130 kb on + strand, within LU632_RS04805 at 942.145 kb on - strand, within LU632_RS04805 at 942.194 kb on - strand at 942.912 kb on + strand, within LU632_RS04810 at 942.912 kb on + strand, within LU632_RS04810 at 943.094 kb on + strand, within LU632_RS04815 at 943.094 kb on + strand, within LU632_RS04815
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 941,351 + -0.7 941,379 - -0.1 941,435 - +0.6 941,511 - +0.6 941,515 - -0.5 941,659 - -1.0 941,664 - LU632_RS04800 0.11 +1.0 941,669 + LU632_RS04800 0.15 -1.0 941,670 - LU632_RS04800 0.15 -0.9 941,722 + LU632_RS04800 0.50 -0.3 941,799 + -0.3 941,800 - -1.0 941,880 + +2.6 941,953 + -0.7 942,000 + LU632_RS04805 0.22 -1.3 942,000 + LU632_RS04805 0.22 +0.0 942,027 + LU632_RS04805 0.32 -0.5 942,073 - LU632_RS04805 0.49 -1.0 942,130 + LU632_RS04805 0.69 -0.6 942,145 - LU632_RS04805 0.75 -0.1 942,194 - -0.7 942,912 + LU632_RS04810 0.76 -1.0 942,912 + LU632_RS04810 0.76 -0.1 943,094 + LU632_RS04815 0.83 +1.4 943,094 + LU632_RS04815 0.83 -2.3
Or see this region's nucleotide sequence