Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04625 and LU632_RS04630 are separated by 215 nucleotides LU632_RS04630 and LU632_RS04635 overlap by 85 nucleotides
LU632_RS04625: LU632_RS04625 - hypothetical protein, at 903,797 to 904,717
_RS04625
LU632_RS04630: LU632_RS04630 - hypothetical protein, at 904,933 to 905,238
_RS04630
LU632_RS04635: LU632_RS04635 - IS3 family transposase, at 905,154 to 906,354
_RS04635
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 903.964 kb on + strand, within LU632_RS04625 at 903.964 kb on + strand, within LU632_RS04625 at 904.148 kb on + strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.160 kb on - strand, within LU632_RS04625 at 904.255 kb on + strand, within LU632_RS04625 at 904.302 kb on - strand, within LU632_RS04625 at 904.397 kb on - strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.402 kb on + strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.403 kb on - strand, within LU632_RS04625 at 904.431 kb on - strand, within LU632_RS04625 at 904.498 kb on + strand, within LU632_RS04625 at 904.511 kb on - strand, within LU632_RS04625 at 904.646 kb on + strand at 904.647 kb on - strand at 904.664 kb on + strand at 904.665 kb on - strand at 904.696 kb on + strand at 905.139 kb on + strand, within LU632_RS04630 at 905.139 kb on + strand, within LU632_RS04630 at 905.149 kb on - strand, within LU632_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 903,964 + LU632_RS04625 0.18 +0.0 903,964 + LU632_RS04625 0.18 +0.7 904,148 + LU632_RS04625 0.38 -0.4 904,160 - LU632_RS04625 0.39 -1.4 904,160 - LU632_RS04625 0.39 +1.0 904,160 - LU632_RS04625 0.39 +1.6 904,255 + LU632_RS04625 0.50 +0.9 904,302 - LU632_RS04625 0.55 +0.3 904,397 - LU632_RS04625 0.65 +1.0 904,402 + LU632_RS04625 0.66 -0.8 904,402 + LU632_RS04625 0.66 -0.8 904,402 + LU632_RS04625 0.66 +0.4 904,403 - LU632_RS04625 0.66 +2.3 904,403 - LU632_RS04625 0.66 +0.0 904,403 - LU632_RS04625 0.66 +0.2 904,403 - LU632_RS04625 0.66 -0.7 904,403 - LU632_RS04625 0.66 -1.8 904,403 - LU632_RS04625 0.66 -0.5 904,403 - LU632_RS04625 0.66 -1.3 904,403 - LU632_RS04625 0.66 +0.6 904,431 - LU632_RS04625 0.69 -2.0 904,498 + LU632_RS04625 0.76 +0.3 904,511 - LU632_RS04625 0.78 +0.0 904,646 + -0.3 904,647 - -1.0 904,664 + -0.1 904,665 - -3.0 904,696 + +0.6 905,139 + LU632_RS04630 0.67 -1.0 905,139 + LU632_RS04630 0.67 +0.0 905,149 - LU632_RS04630 0.71 -0.6
Or see this region's nucleotide sequence