Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04440 and LU632_RS04445 are separated by 65 nucleotides LU632_RS04445 and LU632_RS04450 are separated by 110 nucleotides LU632_RS04450 and LU632_RS04455 are separated by 2 nucleotides
LU632_RS04440: LU632_RS04440 - IS481 family transposase, at 877,256 to 878,296
_RS04440
LU632_RS04445: LU632_RS04445 - hypothetical protein, at 878,362 to 878,622
_RS04445
LU632_RS04450: LU632_RS04450 - SprT-like domain-containing protein, at 878,733 to 879,551
_RS04450
LU632_RS04455: LU632_RS04455 - antirestriction protein ArdR, at 879,554 to 879,787
_RS04455
Position (kb) 878
879 Strain fitness (log2 ratio) -2
-1
0
1 at 878.486 kb on - strand, within LU632_RS04445 at 878.486 kb on - strand, within LU632_RS04445 at 878.613 kb on - strand at 878.613 kb on - strand at 878.877 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.288 kb on - strand, within LU632_RS04450 at 879.527 kb on - strand at 879.622 kb on + strand, within LU632_RS04455 at 879.622 kb on + strand, within LU632_RS04455
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 878,486 - LU632_RS04445 0.48 -2.3 878,486 - LU632_RS04445 0.48 -0.4 878,613 - -0.7 878,613 - -0.6 878,877 - LU632_RS04450 0.18 +0.0 879,288 - LU632_RS04450 0.68 -1.6 879,288 - LU632_RS04450 0.68 +0.0 879,527 - +1.0 879,622 + LU632_RS04455 0.29 +0.2 879,622 + LU632_RS04455 0.29 -0.7
Or see this region's nucleotide sequence