Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04205

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04200 and LU632_RS04205 are separated by 660 nucleotidesLU632_RS04205 and LU632_RS04210 are separated by 24 nucleotidesLU632_RS04210 and LU632_RS04215 are separated by 160 nucleotides LU632_RS04200: LU632_RS04200 - AraC family ligand binding domain-containing protein, at 834,803 to 835,315 _RS04200 LU632_RS04205: LU632_RS04205 - hypothetical protein, at 835,976 to 836,155 _RS04205 LU632_RS04210: LU632_RS04210 - 2OG-Fe dioxygenase family protein, at 836,180 to 836,524 _RS04210 LU632_RS04215: LU632_RS04215 - lysine exporter LysO family protein, at 836,685 to 837,575 _RS04215 Position (kb) 835 836 837Strain fitness (log2 ratio) -2 -1 0 1at 835.004 kb on - strand, within LU632_RS04200at 835.004 kb on - strand, within LU632_RS04200at 835.010 kb on - strand, within LU632_RS04200at 835.031 kb on + strand, within LU632_RS04200at 835.088 kb on - strand, within LU632_RS04200at 835.357 kb on - strandat 836.054 kb on + strand, within LU632_RS04205at 836.522 kb on + strandat 836.545 kb on + strandat 836.556 kb on + strandat 836.603 kb on + strandat 837.075 kb on - strand, within LU632_RS04215at 837.098 kb on - strand, within LU632_RS04215at 837.102 kb on + strand, within LU632_RS04215at 837.103 kb on - strand, within LU632_RS04215

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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835,004 - LU632_RS04200 0.39 -0.0
835,004 - LU632_RS04200 0.39 -0.2
835,010 - LU632_RS04200 0.40 +1.3
835,031 + LU632_RS04200 0.44 +0.5
835,088 - LU632_RS04200 0.56 -0.4
835,357 - -0.6
836,054 + LU632_RS04205 0.43 -0.9
836,522 + +0.6
836,545 + -0.2
836,556 + +0.2
836,603 + -1.3
837,075 - LU632_RS04215 0.44 -2.0
837,098 - LU632_RS04215 0.46 -0.3
837,102 + LU632_RS04215 0.47 -1.0
837,103 - LU632_RS04215 0.47 -1.3

Or see this region's nucleotide sequence