Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04200 and LU632_RS04205 are separated by 660 nucleotides LU632_RS04205 and LU632_RS04210 are separated by 24 nucleotides LU632_RS04210 and LU632_RS04215 are separated by 160 nucleotides
LU632_RS04200: LU632_RS04200 - AraC family ligand binding domain-containing protein, at 834,803 to 835,315
_RS04200
LU632_RS04205: LU632_RS04205 - hypothetical protein, at 835,976 to 836,155
_RS04205
LU632_RS04210: LU632_RS04210 - 2OG-Fe dioxygenase family protein, at 836,180 to 836,524
_RS04210
LU632_RS04215: LU632_RS04215 - lysine exporter LysO family protein, at 836,685 to 837,575
_RS04215
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1 at 835.004 kb on - strand, within LU632_RS04200 at 835.004 kb on - strand, within LU632_RS04200 at 835.010 kb on - strand, within LU632_RS04200 at 835.031 kb on + strand, within LU632_RS04200 at 835.088 kb on - strand, within LU632_RS04200 at 835.357 kb on - strand at 836.054 kb on + strand, within LU632_RS04205 at 836.522 kb on + strand at 836.545 kb on + strand at 836.556 kb on + strand at 836.603 kb on + strand at 837.075 kb on - strand, within LU632_RS04215 at 837.098 kb on - strand, within LU632_RS04215 at 837.102 kb on + strand, within LU632_RS04215 at 837.103 kb on - strand, within LU632_RS04215
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 835,004 - LU632_RS04200 0.39 -0.0 835,004 - LU632_RS04200 0.39 -0.2 835,010 - LU632_RS04200 0.40 +1.3 835,031 + LU632_RS04200 0.44 +0.5 835,088 - LU632_RS04200 0.56 -0.4 835,357 - -0.6 836,054 + LU632_RS04205 0.43 -0.9 836,522 + +0.6 836,545 + -0.2 836,556 + +0.2 836,603 + -1.3 837,075 - LU632_RS04215 0.44 -2.0 837,098 - LU632_RS04215 0.46 -0.3 837,102 + LU632_RS04215 0.47 -1.0 837,103 - LU632_RS04215 0.47 -1.3
Or see this region's nucleotide sequence