Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS04190

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS04185 and LU632_RS04190 are separated by 453 nucleotidesLU632_RS04190 and LU632_RS04195 are separated by 609 nucleotides LU632_RS04185: LU632_RS04185 - transglycosylase SLT domain-containing protein, at 830,820 to 831,302 _RS04185 LU632_RS04190: LU632_RS04190 - hypothetical protein, at 831,756 to 831,893 _RS04190 LU632_RS04195: LU632_RS04195 - hypothetical protein, at 832,503 to 833,861 _RS04195 Position (kb) 831 832Strain fitness (log2 ratio) -1 0 1at 831.128 kb on - strand, within LU632_RS04185at 831.776 kb on + strand, within LU632_RS04190at 831.842 kb on + strand, within LU632_RS04190at 831.924 kb on + strandat 832.058 kb on - strandat 832.104 kb on - strandat 832.107 kb on + strandat 832.207 kb on - strandat 832.207 kb on - strandat 832.268 kb on - strandat 832.479 kb on - strandat 832.479 kb on - strandat 832.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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831,128 - LU632_RS04185 0.64 +1.2
831,776 + LU632_RS04190 0.14 -0.4
831,842 + LU632_RS04190 0.62 -1.0
831,924 + +0.7
832,058 - +0.2
832,104 - -1.6
832,107 + +0.0
832,207 - -1.0
832,207 - -0.5
832,268 - -0.3
832,479 - -0.3
832,479 - +0.6
832,548 - +0.7

Or see this region's nucleotide sequence