Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03495 and LU632_RS03500 are separated by 7 nucleotides LU632_RS03500 and LU632_RS03505 overlap by 37 nucleotides LU632_RS03505 and LU632_RS03510 are separated by 67 nucleotides LU632_RS03510 and LU632_RS03515 overlap by 1 nucleotides LU632_RS03515 and LU632_RS03520 are separated by 1 nucleotides LU632_RS03520 and LU632_RS03525 overlap by 4 nucleotides LU632_RS03525 and LU632_RS03530 overlap by 8 nucleotides
LU632_RS03495: LU632_RS03495 - phage regulatory CII family protein, at 711,478 to 711,987
_RS03495
LU632_RS03500: LU632_RS03500 - DUF2724 domain-containing protein, at 711,995 to 712,195
_RS03500
LU632_RS03505: LU632_RS03505 - DUF5347 domain-containing protein, at 712,159 to 712,497
_RS03505
LU632_RS03510: LU632_RS03510 - DUF2732 domain-containing protein, at 712,565 to 712,792
_RS03510
LU632_RS03515: LU632_RS03515 - TraR/DksA family transcriptional regulator, at 712,792 to 713,013
_RS03515
LU632_RS03520: LU632_RS03520 - 3'-5' exonuclease, at 713,015 to 713,722
_RS03520
LU632_RS03525: LU632_RS03525 - DUF5405 family protein, at 713,719 to 714,000
_RS03525
LU632_RS03530: LU632_RS03530 - replication endonuclease, at 713,993 to 716,218
_RS03530
Position (kb) 712
713
714 Strain fitness (log2 ratio) -2
-1
0
1
2 at 711.994 kb on + strand at 711.994 kb on + strand at 711.995 kb on - strand at 712.139 kb on - strand, within LU632_RS03500 at 712.212 kb on + strand, within LU632_RS03505 at 712.228 kb on - strand, within LU632_RS03505 at 712.238 kb on + strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.239 kb on - strand, within LU632_RS03505 at 712.347 kb on + strand, within LU632_RS03505 at 712.395 kb on - strand, within LU632_RS03505 at 712.431 kb on + strand, within LU632_RS03505 at 712.851 kb on - strand, within LU632_RS03515 at 712.851 kb on - strand, within LU632_RS03515 at 712.851 kb on - strand, within LU632_RS03515 at 712.851 kb on - strand, within LU632_RS03515 at 713.053 kb on - strand at 713.198 kb on - strand, within LU632_RS03520 at 713.291 kb on - strand, within LU632_RS03520 at 713.311 kb on + strand, within LU632_RS03520 at 713.326 kb on + strand, within LU632_RS03520 at 713.404 kb on - strand, within LU632_RS03520 at 713.404 kb on - strand, within LU632_RS03520 at 713.422 kb on - strand, within LU632_RS03520 at 713.422 kb on - strand, within LU632_RS03520 at 713.424 kb on + strand, within LU632_RS03520 at 713.445 kb on - strand, within LU632_RS03520 at 713.445 kb on - strand, within LU632_RS03520 at 713.507 kb on + strand, within LU632_RS03520 at 713.531 kb on - strand, within LU632_RS03520 at 713.541 kb on - strand, within LU632_RS03520 at 713.550 kb on - strand, within LU632_RS03520 at 713.550 kb on - strand, within LU632_RS03520 at 713.611 kb on + strand, within LU632_RS03520 at 713.735 kb on + strand at 713.736 kb on - strand at 713.736 kb on - strand at 713.738 kb on + strand at 713.739 kb on - strand at 713.885 kb on + strand, within LU632_RS03525 at 713.886 kb on - strand, within LU632_RS03525 at 713.914 kb on - strand, within LU632_RS03525 at 713.960 kb on + strand, within LU632_RS03525 at 713.961 kb on - strand, within LU632_RS03525 at 713.961 kb on - strand, within LU632_RS03525 at 713.961 kb on - strand, within LU632_RS03525 at 713.998 kb on + strand at 713.998 kb on + strand at 713.998 kb on + strand at 713.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 711,994 + -1.2 711,994 + -0.4 711,995 - +0.4 712,139 - LU632_RS03500 0.72 +0.5 712,212 + LU632_RS03505 0.16 +0.6 712,228 - LU632_RS03505 0.20 -0.3 712,238 + LU632_RS03505 0.23 -0.3 712,239 - LU632_RS03505 0.24 -0.0 712,239 - LU632_RS03505 0.24 +0.8 712,239 - LU632_RS03505 0.24 -1.2 712,347 + LU632_RS03505 0.55 -0.6 712,395 - LU632_RS03505 0.70 -0.4 712,431 + LU632_RS03505 0.80 -1.6 712,851 - LU632_RS03515 0.27 -0.0 712,851 - LU632_RS03515 0.27 -1.0 712,851 - LU632_RS03515 0.27 -2.0 712,851 - LU632_RS03515 0.27 -0.9 713,053 - -0.6 713,198 - LU632_RS03520 0.26 +0.0 713,291 - LU632_RS03520 0.39 +0.2 713,311 + LU632_RS03520 0.42 +1.2 713,326 + LU632_RS03520 0.44 +0.1 713,404 - LU632_RS03520 0.55 +0.1 713,404 - LU632_RS03520 0.55 +2.6 713,422 - LU632_RS03520 0.57 -0.1 713,422 - LU632_RS03520 0.57 -1.2 713,424 + LU632_RS03520 0.58 -0.2 713,445 - LU632_RS03520 0.61 -0.3 713,445 - LU632_RS03520 0.61 -0.0 713,507 + LU632_RS03520 0.69 -0.0 713,531 - LU632_RS03520 0.73 -0.6 713,541 - LU632_RS03520 0.74 +0.8 713,550 - LU632_RS03520 0.76 +1.0 713,550 - LU632_RS03520 0.76 -1.0 713,611 + LU632_RS03520 0.84 -2.0 713,735 + +0.1 713,736 - +1.0 713,736 - -0.6 713,738 + -0.2 713,739 - -0.0 713,885 + LU632_RS03525 0.59 -0.4 713,886 - LU632_RS03525 0.59 -1.6 713,914 - LU632_RS03525 0.69 -0.3 713,960 + LU632_RS03525 0.85 -0.1 713,961 - LU632_RS03525 0.86 +0.3 713,961 - LU632_RS03525 0.86 +0.2 713,961 - LU632_RS03525 0.86 -0.7 713,998 + +0.3 713,998 + -0.4 713,998 + -1.0 713,998 + -0.3
Or see this region's nucleotide sequence