Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03345

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03340 and LU632_RS03345 are separated by 99 nucleotidesLU632_RS03345 and LU632_RS03350 are separated by 380 nucleotides LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069 _RS03340 LU632_RS03345: LU632_RS03345 - iron ABC transporter substrate-binding protein, at 686,169 to 687,173 _RS03345 LU632_RS03350: LU632_RS03350 - IS5 family transposase, at 687,554 to 688,397 _RS03350 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1at 685.176 kb on + strand, within LU632_RS03340at 685.446 kb on - strand, within LU632_RS03340at 685.534 kb on + strand, within LU632_RS03340at 685.654 kb on + strand, within LU632_RS03340at 685.787 kb on - strand, within LU632_RS03340at 685.860 kb on - strand, within LU632_RS03340at 685.917 kb on - strand, within LU632_RS03340at 686.069 kb on + strandat 686.302 kb on + strand, within LU632_RS03345at 686.303 kb on - strand, within LU632_RS03345at 686.420 kb on + strand, within LU632_RS03345at 686.456 kb on - strand, within LU632_RS03345at 686.458 kb on + strand, within LU632_RS03345at 686.515 kb on + strand, within LU632_RS03345at 686.521 kb on + strand, within LU632_RS03345at 686.577 kb on - strand, within LU632_RS03345at 686.910 kb on - strand, within LU632_RS03345at 686.910 kb on - strand, within LU632_RS03345at 686.910 kb on - strand, within LU632_RS03345at 687.033 kb on - strand, within LU632_RS03345at 687.204 kb on + strandat 687.205 kb on - strandat 687.295 kb on + strandat 687.381 kb on + strandat 687.382 kb on - strandat 687.424 kb on + strandat 687.425 kb on - strandat 687.457 kb on - strandat 687.467 kb on - strandat 687.475 kb on - strandat 687.503 kb on + strandat 687.513 kb on + strandat 687.513 kb on + strandat 687.513 kb on + strandat 687.514 kb on - strandat 687.514 kb on - strandat 687.555 kb on + strandat 687.560 kb on - strandat 687.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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685,176 + LU632_RS03340 0.40 -1.0
685,446 - LU632_RS03340 0.58 -1.0
685,534 + LU632_RS03340 0.64 +1.0
685,654 + LU632_RS03340 0.72 +1.0
685,787 - LU632_RS03340 0.81 +1.6
685,860 - LU632_RS03340 0.86 -1.0
685,917 - LU632_RS03340 0.90 -1.0
686,069 + -0.0
686,302 + LU632_RS03345 0.13 -0.0
686,303 - LU632_RS03345 0.13 -0.0
686,420 + LU632_RS03345 0.25 +1.0
686,456 - LU632_RS03345 0.29 -0.0
686,458 + LU632_RS03345 0.29 -1.0
686,515 + LU632_RS03345 0.34 -1.0
686,521 + LU632_RS03345 0.35 -0.0
686,577 - LU632_RS03345 0.41 -1.6
686,910 - LU632_RS03345 0.74 -0.6
686,910 - LU632_RS03345 0.74 -1.0
686,910 - LU632_RS03345 0.74 -1.0
687,033 - LU632_RS03345 0.86 -1.0
687,204 + -2.0
687,205 - -0.0
687,295 + -0.8
687,381 + -0.9
687,382 - -1.7
687,424 + +1.0
687,425 - -0.4
687,457 - -0.6
687,467 - +0.1
687,475 - -0.1
687,503 + +0.8
687,513 + +0.7
687,513 + -1.0
687,513 + +1.0
687,514 - +0.1
687,514 - -0.7
687,555 + -0.7
687,560 - -0.4
687,631 + -0.5

Or see this region's nucleotide sequence