Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03110 and LU632_RS03115 are separated by 87 nucleotides LU632_RS03115 and LU632_RS03120 are separated by 341 nucleotides
LU632_RS03110: LU632_RS03110 - type III effector HrpK, at 637,433 to 639,808
_RS03110
LU632_RS03115: LU632_RS03115 - hypothetical protein, at 639,896 to 640,225
_RS03115
LU632_RS03120: LU632_RS03120 - acyl-CoA thioesterase, at 640,567 to 640,950
_RS03120
Position (kb) 639
640
641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.910 kb on - strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.958 kb on + strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 638.959 kb on - strand, within LU632_RS03110 at 639.066 kb on - strand, within LU632_RS03110 at 639.143 kb on + strand, within LU632_RS03110 at 639.480 kb on + strand, within LU632_RS03110 at 639.481 kb on - strand, within LU632_RS03110 at 639.525 kb on + strand, within LU632_RS03110 at 639.674 kb on - strand at 639.730 kb on + strand at 639.844 kb on - strand at 639.865 kb on - strand at 639.865 kb on - strand at 639.901 kb on + strand at 639.901 kb on + strand at 639.928 kb on + strand at 639.962 kb on - strand, within LU632_RS03115 at 640.030 kb on + strand, within LU632_RS03115 at 640.186 kb on + strand, within LU632_RS03115 at 640.226 kb on - strand at 640.316 kb on - strand at 640.332 kb on - strand at 640.460 kb on + strand at 640.520 kb on + strand at 640.520 kb on + strand at 640.525 kb on - strand at 640.669 kb on + strand, within LU632_RS03120 at 640.774 kb on - strand, within LU632_RS03120 at 640.788 kb on + strand, within LU632_RS03120 at 640.788 kb on + strand, within LU632_RS03120 at 640.845 kb on + strand, within LU632_RS03120 at 640.845 kb on + strand, within LU632_RS03120 at 640.846 kb on - strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.847 kb on + strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.848 kb on - strand, within LU632_RS03120 at 640.884 kb on - strand, within LU632_RS03120 at 640.935 kb on - strand at 641.010 kb on + strand at 641.039 kb on + strand at 641.056 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.156 kb on + strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.157 kb on - strand at 641.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 638,910 - LU632_RS03110 0.62 +0.3 638,958 + LU632_RS03110 0.64 -0.4 638,958 + LU632_RS03110 0.64 -3.3 638,958 + LU632_RS03110 0.64 -1.2 638,958 + LU632_RS03110 0.64 +1.6 638,959 - LU632_RS03110 0.64 -0.0 638,959 - LU632_RS03110 0.64 -0.4 638,959 - LU632_RS03110 0.64 +0.6 638,959 - LU632_RS03110 0.64 -0.0 639,066 - LU632_RS03110 0.69 -1.6 639,143 + LU632_RS03110 0.72 +0.3 639,480 + LU632_RS03110 0.86 +0.2 639,481 - LU632_RS03110 0.86 -0.6 639,525 + LU632_RS03110 0.88 +0.2 639,674 - -0.0 639,730 + -1.0 639,844 - -1.0 639,865 - +0.2 639,865 - -0.6 639,901 + +0.0 639,901 + +0.6 639,928 + -0.0 639,962 - LU632_RS03115 0.20 -1.0 640,030 + LU632_RS03115 0.41 -1.0 640,186 + LU632_RS03115 0.88 -1.6 640,226 - -2.3 640,316 - -0.0 640,332 - -1.3 640,460 + +0.1 640,520 + +0.4 640,520 + +1.6 640,525 - +0.6 640,669 + LU632_RS03120 0.27 +0.3 640,774 - LU632_RS03120 0.54 -0.0 640,788 + LU632_RS03120 0.58 +0.6 640,788 + LU632_RS03120 0.58 +0.3 640,845 + LU632_RS03120 0.72 +2.0 640,845 + LU632_RS03120 0.72 +0.3 640,846 - LU632_RS03120 0.73 +1.6 640,847 + LU632_RS03120 0.73 -0.6 640,847 + LU632_RS03120 0.73 +1.3 640,847 + LU632_RS03120 0.73 +0.1 640,847 + LU632_RS03120 0.73 -0.0 640,848 - LU632_RS03120 0.73 -0.2 640,848 - LU632_RS03120 0.73 +1.0 640,848 - LU632_RS03120 0.73 -0.1 640,884 - LU632_RS03120 0.83 -0.2 640,935 - +0.7 641,010 + -0.0 641,039 + +0.4 641,056 + +1.0 641,156 + -0.5 641,156 + +0.1 641,156 + -1.0 641,156 + -0.6 641,156 + -0.0 641,156 + -0.7 641,157 - -0.4 641,157 - +0.6 641,157 - -0.0 641,157 - +0.4 641,210 - -0.0
Or see this region's nucleotide sequence