Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02540 and serB are separated by 123 nucleotides serB and radA are separated by 14 nucleotides
LU632_RS02540: LU632_RS02540 - YtjB family periplasmic protein, at 504,494 to 505,156
_RS02540
LU632_RS02545: serB - phosphoserine phosphatase, at 505,280 to 506,257
serB
LU632_RS02550: radA - DNA repair protein RadA, at 506,272 to 507,654
radA
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1 at 504.305 kb on - strand at 504.625 kb on + strand, within LU632_RS02540 at 504.625 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.789 kb on + strand, within LU632_RS02540 at 504.913 kb on + strand, within LU632_RS02540 at 505.082 kb on + strand, within LU632_RS02540 at 505.083 kb on - strand, within LU632_RS02540 at 505.175 kb on - strand at 505.175 kb on - strand at 505.205 kb on + strand at 505.205 kb on + strand at 505.206 kb on - strand at 505.278 kb on + strand at 505.279 kb on - strand at 505.286 kb on - strand at 505.289 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.661 kb on - strand, within serB at 505.661 kb on - strand, within serB at 505.903 kb on + strand, within serB at 505.907 kb on + strand, within serB at 505.919 kb on + strand, within serB at 506.009 kb on - strand, within serB at 506.026 kb on + strand, within serB at 506.026 kb on + strand, within serB at 506.027 kb on - strand, within serB at 506.269 kb on - strand at 506.299 kb on + strand at 506.300 kb on + strand at 506.301 kb on - strand at 506.301 kb on - strand at 506.304 kb on + strand at 506.599 kb on - strand, within radA at 506.609 kb on + strand, within radA at 506.650 kb on + strand, within radA at 506.650 kb on + strand, within radA at 506.651 kb on - strand, within radA at 506.727 kb on + strand, within radA at 506.728 kb on - strand, within radA at 506.784 kb on + strand, within radA at 506.878 kb on + strand, within radA at 506.879 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.934 kb on - strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 506.979 kb on + strand, within radA at 507.037 kb on - strand, within radA at 507.037 kb on - strand, within radA at 507.043 kb on - strand, within radA
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 504,305 - +0.2 504,625 + LU632_RS02540 0.20 +1.0 504,625 + LU632_RS02540 0.20 -1.0 504,659 + LU632_RS02540 0.25 -1.0 504,659 + LU632_RS02540 0.25 +0.4 504,659 + LU632_RS02540 0.25 -1.6 504,789 + LU632_RS02540 0.44 +0.1 504,913 + LU632_RS02540 0.63 -1.9 505,082 + LU632_RS02540 0.89 -0.9 505,083 - LU632_RS02540 0.89 -1.1 505,175 - -0.4 505,175 - +0.3 505,205 + -1.6 505,205 + -0.2 505,206 - +0.7 505,278 + +0.6 505,279 - -2.0 505,286 - -0.0 505,289 - -1.6 505,319 - -1.0 505,319 - -2.0 505,660 + serB LU632_RS02545 0.39 -1.0 505,660 + serB LU632_RS02545 0.39 -0.0 505,660 + serB LU632_RS02545 0.39 -1.0 505,660 + serB LU632_RS02545 0.39 -0.0 505,661 - serB LU632_RS02545 0.39 -1.0 505,661 - serB LU632_RS02545 0.39 -1.0 505,903 + serB LU632_RS02545 0.64 -0.0 505,907 + serB LU632_RS02545 0.64 +0.6 505,919 + serB LU632_RS02545 0.65 -1.6 506,009 - serB LU632_RS02545 0.75 -0.0 506,026 + serB LU632_RS02545 0.76 -2.1 506,026 + serB LU632_RS02545 0.76 -1.2 506,027 - serB LU632_RS02545 0.76 -1.6 506,269 - +0.6 506,299 + -0.5 506,300 + -0.0 506,301 - -1.0 506,301 - +0.1 506,304 + +0.7 506,599 - radA LU632_RS02550 0.24 +0.3 506,609 + radA LU632_RS02550 0.24 -0.0 506,650 + radA LU632_RS02550 0.27 -0.5 506,650 + radA LU632_RS02550 0.27 -0.2 506,651 - radA LU632_RS02550 0.27 +1.1 506,727 + radA LU632_RS02550 0.33 -0.3 506,728 - radA LU632_RS02550 0.33 -0.6 506,784 + radA LU632_RS02550 0.37 +0.7 506,878 + radA LU632_RS02550 0.44 +1.6 506,879 - radA LU632_RS02550 0.44 -0.0 506,934 - radA LU632_RS02550 0.48 -0.6 506,934 - radA LU632_RS02550 0.48 -1.6 506,934 - radA LU632_RS02550 0.48 +0.0 506,979 + radA LU632_RS02550 0.51 -0.5 506,979 + radA LU632_RS02550 0.51 +0.3 506,979 + radA LU632_RS02550 0.51 -0.2 507,037 - radA LU632_RS02550 0.55 +0.6 507,037 - radA LU632_RS02550 0.55 +0.2 507,043 - radA LU632_RS02550 0.56 -0.7
Or see this region's nucleotide sequence