Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02535 and LU632_RS02540 are separated by 519 nucleotides LU632_RS02540 and serB are separated by 123 nucleotides
LU632_RS02535: LU632_RS02535 - IS1 family transposase, at 503,277 to 503,974
_RS02535
LU632_RS02540: LU632_RS02540 - YtjB family periplasmic protein, at 504,494 to 505,156
_RS02540
LU632_RS02545: serB - phosphoserine phosphatase, at 505,280 to 506,257
serB
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 504.003 kb on - strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.032 kb on + strand at 504.035 kb on - strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.043 kb on - strand at 504.091 kb on + strand at 504.269 kb on - strand at 504.305 kb on - strand at 504.625 kb on + strand, within LU632_RS02540 at 504.625 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.789 kb on + strand, within LU632_RS02540 at 504.913 kb on + strand, within LU632_RS02540 at 505.082 kb on + strand, within LU632_RS02540 at 505.083 kb on - strand, within LU632_RS02540 at 505.175 kb on - strand at 505.175 kb on - strand at 505.205 kb on + strand at 505.205 kb on + strand at 505.206 kb on - strand at 505.278 kb on + strand at 505.279 kb on - strand at 505.286 kb on - strand at 505.289 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.661 kb on - strand, within serB at 505.661 kb on - strand, within serB at 505.903 kb on + strand, within serB at 505.907 kb on + strand, within serB at 505.919 kb on + strand, within serB at 506.009 kb on - strand, within serB at 506.026 kb on + strand, within serB at 506.026 kb on + strand, within serB at 506.027 kb on - strand, within serB
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 504,003 - -1.4 504,030 + +1.3 504,030 + -0.5 504,030 + +0.6 504,030 + -1.0 504,030 + +0.5 504,030 + +1.2 504,030 + -1.0 504,031 - +1.6 504,031 - +0.8 504,031 - -0.2 504,031 - +0.2 504,031 - -0.4 504,031 - -0.0 504,031 - -0.1 504,031 - +0.3 504,031 - -0.2 504,032 + -0.6 504,035 - +1.0 504,042 + -0.0 504,042 + +0.3 504,042 + -0.3 504,043 - +0.7 504,091 + -0.8 504,269 - +1.0 504,305 - +0.2 504,625 + LU632_RS02540 0.20 +1.0 504,625 + LU632_RS02540 0.20 -1.0 504,659 + LU632_RS02540 0.25 -1.0 504,659 + LU632_RS02540 0.25 +0.4 504,659 + LU632_RS02540 0.25 -1.6 504,789 + LU632_RS02540 0.44 +0.1 504,913 + LU632_RS02540 0.63 -1.9 505,082 + LU632_RS02540 0.89 -0.9 505,083 - LU632_RS02540 0.89 -1.1 505,175 - -0.4 505,175 - +0.3 505,205 + -1.6 505,205 + -0.2 505,206 - +0.7 505,278 + +0.6 505,279 - -2.0 505,286 - -0.0 505,289 - -1.6 505,319 - -1.0 505,319 - -2.0 505,660 + serB LU632_RS02545 0.39 -1.0 505,660 + serB LU632_RS02545 0.39 -0.0 505,660 + serB LU632_RS02545 0.39 -1.0 505,660 + serB LU632_RS02545 0.39 -0.0 505,661 - serB LU632_RS02545 0.39 -1.0 505,661 - serB LU632_RS02545 0.39 -1.0 505,903 + serB LU632_RS02545 0.64 -0.0 505,907 + serB LU632_RS02545 0.64 +0.6 505,919 + serB LU632_RS02545 0.65 -1.6 506,009 - serB LU632_RS02545 0.75 -0.0 506,026 + serB LU632_RS02545 0.76 -2.1 506,026 + serB LU632_RS02545 0.76 -1.2 506,027 - serB LU632_RS02545 0.76 -1.6
Or see this region's nucleotide sequence