Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02270 and LU632_RS02275 are separated by 307 nucleotides LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides LU632_RS02280 and LU632_RS02285 overlap by 1 nucleotides LU632_RS02285 and LU632_RS02290 are separated by 2 nucleotides
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
LU632_RS02285: LU632_RS02285 - phage holin family protein, at 450,816 to 451,208
_RS02285
LU632_RS02290: LU632_RS02290 - YqjD family protein, at 451,211 to 451,516
_RS02290
Position (kb) 449
450
451 Strain fitness (log2 ratio) -2
-1
0
1
2 at 448.994 kb on + strand at 449.280 kb on - strand at 449.341 kb on - strand, within LU632_RS02270 at 449.408 kb on + strand, within LU632_RS02270 at 449.524 kb on - strand, within LU632_RS02270 at 449.544 kb on + strand, within LU632_RS02270 at 449.600 kb on + strand at 449.657 kb on + strand at 450.062 kb on - strand, within LU632_RS02275 at 450.074 kb on + strand, within LU632_RS02275 at 450.193 kb on + strand, within LU632_RS02275 at 450.194 kb on - strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280 at 450.707 kb on + strand, within LU632_RS02280 at 450.802 kb on + strand at 450.802 kb on + strand at 450.802 kb on + strand at 450.803 kb on - strand at 450.803 kb on - strand at 450.832 kb on - strand at 450.849 kb on - strand at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.993 kb on - strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.996 kb on - strand, within LU632_RS02285 at 450.999 kb on + strand, within LU632_RS02285 at 451.029 kb on - strand, within LU632_RS02285 at 451.163 kb on + strand, within LU632_RS02285
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 448,994 + -0.4 449,280 - +0.4 449,341 - LU632_RS02270 0.10 +0.3 449,408 + LU632_RS02270 0.33 -1.0 449,524 - LU632_RS02270 0.72 +0.3 449,544 + LU632_RS02270 0.79 -2.5 449,600 + +0.3 449,657 + -0.2 450,062 - LU632_RS02275 0.38 +0.2 450,074 + LU632_RS02275 0.41 -0.6 450,193 + LU632_RS02275 0.72 -0.8 450,194 - LU632_RS02275 0.72 +0.3 450,195 + LU632_RS02275 0.72 -1.0 450,195 + LU632_RS02275 0.72 -0.3 450,195 + LU632_RS02275 0.72 +0.3 450,196 - LU632_RS02275 0.72 -0.6 450,196 - LU632_RS02275 0.72 -1.3 450,196 - LU632_RS02275 0.72 +0.6 450,299 - -0.1 450,308 + +1.0 450,368 - +1.8 450,551 + +0.6 450,574 - LU632_RS02280 0.14 +1.2 450,707 + LU632_RS02280 0.61 +0.2 450,802 + -0.0 450,802 + +1.0 450,802 + -1.4 450,803 - -0.4 450,803 - +0.4 450,832 - -0.6 450,849 - +0.7 450,982 - LU632_RS02285 0.42 -0.4 450,982 - LU632_RS02285 0.42 +0.8 450,982 - LU632_RS02285 0.42 -2.6 450,993 - LU632_RS02285 0.45 +0.8 450,995 + LU632_RS02285 0.46 -0.8 450,995 + LU632_RS02285 0.46 +0.1 450,996 - LU632_RS02285 0.46 +1.6 450,999 + LU632_RS02285 0.47 +1.0 451,029 - LU632_RS02285 0.54 -1.0 451,163 + LU632_RS02285 0.88 +2.1
Or see this region's nucleotide sequence