Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02155 and LU632_RS02160 are separated by 260 nucleotides LU632_RS02160 and LU632_RS02165 are separated by 22 nucleotides LU632_RS02165 and LU632_RS02170 are separated by 3 nucleotides LU632_RS02170 and LU632_RS02175 are separated by 72 nucleotides
LU632_RS02155: LU632_RS02155 - hypothetical protein, at 427,846 to 428,040
_RS02155
LU632_RS02160: LU632_RS02160 - hypothetical protein, at 428,301 to 428,684
_RS02160
LU632_RS02165: LU632_RS02165 - hypothetical protein, at 428,707 to 429,069
_RS02165
LU632_RS02170: LU632_RS02170 - DUF4312 family protein, at 429,073 to 429,366
_RS02170
LU632_RS02175: LU632_RS02175 - DUF4311 domain-containing protein, at 429,439 to 430,215
_RS02175
Position (kb) 428
429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 427.782 kb on - strand at 427.782 kb on - strand at 427.782 kb on - strand at 428.078 kb on + strand at 428.278 kb on + strand at 428.278 kb on + strand at 428.345 kb on + strand, within LU632_RS02160 at 428.369 kb on - strand, within LU632_RS02160 at 428.369 kb on - strand, within LU632_RS02160 at 428.411 kb on - strand, within LU632_RS02160 at 428.429 kb on - strand, within LU632_RS02160 at 428.558 kb on + strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.559 kb on - strand, within LU632_RS02160 at 428.638 kb on + strand, within LU632_RS02160 at 428.669 kb on + strand at 428.669 kb on + strand at 428.913 kb on + strand, within LU632_RS02165 at 428.913 kb on + strand, within LU632_RS02165 at 428.917 kb on + strand, within LU632_RS02165 at 428.917 kb on + strand, within LU632_RS02165 at 428.923 kb on + strand, within LU632_RS02165 at 428.924 kb on - strand, within LU632_RS02165 at 428.925 kb on + strand, within LU632_RS02165 at 428.935 kb on + strand, within LU632_RS02165 at 428.935 kb on + strand, within LU632_RS02165 at 428.936 kb on - strand, within LU632_RS02165 at 428.936 kb on - strand, within LU632_RS02165 at 429.091 kb on - strand at 429.111 kb on + strand, within LU632_RS02170 at 429.295 kb on + strand, within LU632_RS02170 at 429.364 kb on + strand at 429.364 kb on + strand at 429.419 kb on - strand at 429.419 kb on - strand at 429.468 kb on + strand at 429.469 kb on - strand at 429.760 kb on - strand, within LU632_RS02175 at 430.066 kb on - strand, within LU632_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 427,782 - +0.1 427,782 - -0.0 427,782 - +0.1 428,078 + -0.8 428,278 + -0.9 428,278 + +1.0 428,345 + LU632_RS02160 0.11 -0.1 428,369 - LU632_RS02160 0.18 -1.0 428,369 - LU632_RS02160 0.18 +0.5 428,411 - LU632_RS02160 0.29 -0.7 428,429 - LU632_RS02160 0.33 +0.2 428,558 + LU632_RS02160 0.67 +1.6 428,559 - LU632_RS02160 0.67 -0.3 428,559 - LU632_RS02160 0.67 -0.2 428,559 - LU632_RS02160 0.67 -1.6 428,559 - LU632_RS02160 0.67 -0.6 428,638 + LU632_RS02160 0.88 +1.6 428,669 + +0.4 428,669 + -1.2 428,913 + LU632_RS02165 0.57 -1.0 428,913 + LU632_RS02165 0.57 +0.4 428,917 + LU632_RS02165 0.58 -1.0 428,917 + LU632_RS02165 0.58 +0.6 428,923 + LU632_RS02165 0.60 -0.6 428,924 - LU632_RS02165 0.60 -2.3 428,925 + LU632_RS02165 0.60 -1.0 428,935 + LU632_RS02165 0.63 -1.6 428,935 + LU632_RS02165 0.63 -0.0 428,936 - LU632_RS02165 0.63 -1.8 428,936 - LU632_RS02165 0.63 +1.0 429,091 - -0.4 429,111 + LU632_RS02170 0.13 +2.0 429,295 + LU632_RS02170 0.76 +2.0 429,364 + -0.1 429,364 + -0.1 429,419 - -0.0 429,419 - +1.3 429,468 + +0.5 429,469 - -0.7 429,760 - LU632_RS02175 0.41 +0.1 430,066 - LU632_RS02175 0.81 -0.3
Or see this region's nucleotide sequence