Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01655

Experiment: rich media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS01645 and LU632_RS01650 overlap by 14 nucleotidesLU632_RS01650 and LU632_RS01655 overlap by 8 nucleotidesLU632_RS01655 and LU632_RS01660 overlap by 11 nucleotidesLU632_RS01660 and LU632_RS01665 overlap by 1 nucleotides LU632_RS01645: LU632_RS01645 - GPW/gp25 family protein, at 325,398 to 325,766 _RS01645 LU632_RS01650: LU632_RS01650 - baseplate J/gp47 family protein, at 325,753 to 326,649 _RS01650 LU632_RS01655: LU632_RS01655 - phage tail protein I, at 326,642 to 327,256 _RS01655 LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247 _RS01660 LU632_RS01665: LU632_RS01665 - tail fiber assembly protein, at 328,247 to 328,843 _RS01665 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1 2at 325.650 kb on - strand, within LU632_RS01645at 325.650 kb on - strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.653 kb on - strand, within LU632_RS01645at 325.653 kb on - strand, within LU632_RS01645at 325.795 kb on - strandat 325.922 kb on + strand, within LU632_RS01650at 325.923 kb on - strand, within LU632_RS01650at 326.176 kb on + strand, within LU632_RS01650at 326.176 kb on + strand, within LU632_RS01650at 326.177 kb on - strand, within LU632_RS01650at 326.246 kb on + strand, within LU632_RS01650at 326.246 kb on + strand, within LU632_RS01650at 326.246 kb on + strand, within LU632_RS01650at 326.247 kb on - strand, within LU632_RS01650at 326.360 kb on + strand, within LU632_RS01650at 326.360 kb on + strand, within LU632_RS01650at 326.360 kb on + strand, within LU632_RS01650at 326.361 kb on - strand, within LU632_RS01650at 326.383 kb on + strand, within LU632_RS01650at 326.383 kb on + strand, within LU632_RS01650at 326.383 kb on + strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.385 kb on + strand, within LU632_RS01650at 326.385 kb on + strand, within LU632_RS01650at 326.385 kb on + strand, within LU632_RS01650at 326.386 kb on - strand, within LU632_RS01650at 326.386 kb on - strand, within LU632_RS01650at 326.404 kb on + strand, within LU632_RS01650at 326.404 kb on + strand, within LU632_RS01650at 326.405 kb on - strand, within LU632_RS01650at 326.405 kb on - strand, within LU632_RS01650at 326.648 kb on - strandat 326.648 kb on - strandat 326.749 kb on + strand, within LU632_RS01655at 327.179 kb on - strand, within LU632_RS01655at 327.179 kb on - strand, within LU632_RS01655at 327.201 kb on - strandat 327.201 kb on - strandat 327.202 kb on + strandat 327.255 kb on - strandat 327.255 kb on - strandat 327.259 kb on - strandat 327.453 kb on - strand, within LU632_RS01660at 327.464 kb on + strand, within LU632_RS01660at 327.573 kb on + strand, within LU632_RS01660at 327.658 kb on + strand, within LU632_RS01660at 327.697 kb on - strand, within LU632_RS01660at 327.729 kb on + strand, within LU632_RS01660at 327.729 kb on + strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.730 kb on - strand, within LU632_RS01660at 327.755 kb on + strand, within LU632_RS01660at 327.783 kb on + strand, within LU632_RS01660at 327.800 kb on + strand, within LU632_RS01660at 327.801 kb on - strand, within LU632_RS01660at 327.806 kb on + strand, within LU632_RS01660at 327.806 kb on + strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.807 kb on - strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.810 kb on + strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.811 kb on - strand, within LU632_RS01660at 327.813 kb on - strand, within LU632_RS01660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction rich media
remove
325,650 - LU632_RS01645 0.68 -0.0
325,650 - LU632_RS01645 0.68 +1.0
325,652 + LU632_RS01645 0.69 -0.1
325,652 + LU632_RS01645 0.69 -0.2
325,652 + LU632_RS01645 0.69 -0.0
325,653 - LU632_RS01645 0.69 +0.7
325,653 - LU632_RS01645 0.69 -1.0
325,795 - -2.0
325,922 + LU632_RS01650 0.19 +1.6
325,923 - LU632_RS01650 0.19 +1.0
326,176 + LU632_RS01650 0.47 -0.5
326,176 + LU632_RS01650 0.47 +0.1
326,177 - LU632_RS01650 0.47 +1.0
326,246 + LU632_RS01650 0.55 +1.0
326,246 + LU632_RS01650 0.55 +0.3
326,246 + LU632_RS01650 0.55 +1.0
326,247 - LU632_RS01650 0.55 +0.6
326,360 + LU632_RS01650 0.68 +0.6
326,360 + LU632_RS01650 0.68 -0.3
326,360 + LU632_RS01650 0.68 -1.7
326,361 - LU632_RS01650 0.68 -0.0
326,383 + LU632_RS01650 0.70 +0.2
326,383 + LU632_RS01650 0.70 +2.0
326,383 + LU632_RS01650 0.70 -0.2
326,384 - LU632_RS01650 0.70 -0.0
326,384 - LU632_RS01650 0.70 +1.0
326,384 - LU632_RS01650 0.70 -0.0
326,384 - LU632_RS01650 0.70 +0.2
326,384 - LU632_RS01650 0.70 -1.0
326,385 + LU632_RS01650 0.70 +0.6
326,385 + LU632_RS01650 0.70 -0.0
326,385 + LU632_RS01650 0.70 -1.0
326,386 - LU632_RS01650 0.71 -0.0
326,386 - LU632_RS01650 0.71 +1.0
326,404 + LU632_RS01650 0.73 -1.0
326,404 + LU632_RS01650 0.73 -1.2
326,405 - LU632_RS01650 0.73 +0.1
326,405 - LU632_RS01650 0.73 +1.1
326,648 - -0.4
326,648 - +0.9
326,749 + LU632_RS01655 0.17 -1.0
327,179 - LU632_RS01655 0.87 +1.0
327,179 - LU632_RS01655 0.87 -0.7
327,201 - +0.6
327,201 - +0.1
327,202 + +1.1
327,255 - -0.3
327,255 - +1.1
327,259 - -1.0
327,453 - LU632_RS01660 0.21 -0.0
327,464 + LU632_RS01660 0.22 -0.2
327,573 + LU632_RS01660 0.33 -1.6
327,658 + LU632_RS01660 0.41 -0.0
327,697 - LU632_RS01660 0.45 -2.3
327,729 + LU632_RS01660 0.48 -1.6
327,729 + LU632_RS01660 0.48 -0.3
327,730 - LU632_RS01660 0.48 +1.3
327,730 - LU632_RS01660 0.48 -1.2
327,730 - LU632_RS01660 0.48 -0.9
327,730 - LU632_RS01660 0.48 -0.5
327,755 + LU632_RS01660 0.51 -0.4
327,783 + LU632_RS01660 0.54 -0.1
327,800 + LU632_RS01660 0.55 -1.3
327,801 - LU632_RS01660 0.55 -1.6
327,806 + LU632_RS01660 0.56 +1.0
327,806 + LU632_RS01660 0.56 -0.2
327,807 - LU632_RS01660 0.56 -0.4
327,807 - LU632_RS01660 0.56 +0.4
327,807 - LU632_RS01660 0.56 -0.4
327,807 - LU632_RS01660 0.56 -0.0
327,807 - LU632_RS01660 0.56 -1.3
327,810 + LU632_RS01660 0.56 +1.6
327,810 + LU632_RS01660 0.56 +0.6
327,810 + LU632_RS01660 0.56 -0.0
327,810 + LU632_RS01660 0.56 -0.0
327,810 + LU632_RS01660 0.56 +0.8
327,810 + LU632_RS01660 0.56 -0.0
327,810 + LU632_RS01660 0.56 -1.4
327,810 + LU632_RS01660 0.56 -0.2
327,810 + LU632_RS01660 0.56 -0.4
327,811 - LU632_RS01660 0.56 +1.1
327,811 - LU632_RS01660 0.56 -0.2
327,811 - LU632_RS01660 0.56 +0.3
327,811 - LU632_RS01660 0.56 -0.0
327,813 - LU632_RS01660 0.57 -0.6

Or see this region's nucleotide sequence