Experiment: rich media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpM and LU632_RS01605 are separated by 96 nucleotides LU632_RS01605 and LU632_RS01610 overlap by 1 nucleotides LU632_RS01610 and LU632_RS01615 overlap by 10 nucleotides LU632_RS01615 and LU632_RS01620 overlap by 17 nucleotides LU632_RS01620 and LU632_RS01625 overlap by 4 nucleotides
LU632_RS01600: gpM - phage terminase small subunit, at 320,716 to 321,573
gpM
LU632_RS01605: LU632_RS01605 - head completion/stabilization protein, at 321,670 to 322,194
_RS01605
LU632_RS01610: LU632_RS01610 - tail protein X, at 322,194 to 322,394
_RS01610
LU632_RS01615: LU632_RS01615 - hypothetical protein, at 322,385 to 322,687
_RS01615
LU632_RS01620: LU632_RS01620 - lysozyme, at 322,671 to 323,216
_RS01620
LU632_RS01625: LU632_RS01625 - DUF2514 domain-containing protein, at 323,213 to 323,728
_RS01625
Position (kb) 322
323 Strain fitness (log2 ratio) -2
-1
0
1 at 321.207 kb on + strand, within gpM at 321.207 kb on + strand, within gpM at 321.208 kb on - strand, within gpM at 321.208 kb on - strand, within gpM at 321.610 kb on + strand at 321.665 kb on + strand at 321.690 kb on + strand at 321.690 kb on + strand at 321.691 kb on - strand at 321.935 kb on + strand, within LU632_RS01605 at 321.935 kb on + strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 321.936 kb on - strand, within LU632_RS01605 at 322.282 kb on + strand, within LU632_RS01610 at 322.283 kb on - strand, within LU632_RS01610 at 322.378 kb on + strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.379 kb on - strand at 322.774 kb on + strand, within LU632_RS01620 at 322.797 kb on - strand, within LU632_RS01620 at 322.797 kb on - strand, within LU632_RS01620 at 322.872 kb on + strand, within LU632_RS01620 at 322.931 kb on + strand, within LU632_RS01620 at 322.932 kb on - strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.956 kb on + strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.957 kb on - strand, within LU632_RS01620 at 322.958 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.005 kb on + strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.006 kb on - strand, within LU632_RS01620 at 323.012 kb on + strand, within LU632_RS01620 at 323.013 kb on - strand, within LU632_RS01620 at 323.063 kb on + strand, within LU632_RS01620 at 323.084 kb on - strand, within LU632_RS01620 at 323.239 kb on - strand at 323.283 kb on - strand, within LU632_RS01625 at 323.283 kb on - strand, within LU632_RS01625 at 323.283 kb on - strand, within LU632_RS01625 at 323.283 kb on - strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.284 kb on + strand, within LU632_RS01625 at 323.285 kb on - strand, within LU632_RS01625 at 323.285 kb on - strand, within LU632_RS01625 at 323.285 kb on - strand, within LU632_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction rich media remove 321,207 + gpM LU632_RS01600 0.57 -0.0 321,207 + gpM LU632_RS01600 0.57 +1.6 321,208 - gpM LU632_RS01600 0.57 -0.0 321,208 - gpM LU632_RS01600 0.57 -0.7 321,610 + -1.0 321,665 + -0.0 321,690 + +1.3 321,690 + -0.5 321,691 - -0.6 321,935 + LU632_RS01605 0.50 -0.0 321,935 + LU632_RS01605 0.50 -0.5 321,936 - LU632_RS01605 0.51 +0.4 321,936 - LU632_RS01605 0.51 -0.0 321,936 - LU632_RS01605 0.51 -0.8 321,936 - LU632_RS01605 0.51 +0.3 322,282 + LU632_RS01610 0.44 -2.0 322,283 - LU632_RS01610 0.44 -0.0 322,378 + +0.8 322,379 - +0.4 322,379 - -0.2 322,379 - -0.0 322,774 + LU632_RS01620 0.19 +1.6 322,797 - LU632_RS01620 0.23 +0.3 322,797 - LU632_RS01620 0.23 -0.3 322,872 + LU632_RS01620 0.37 -0.4 322,931 + LU632_RS01620 0.48 +0.6 322,932 - LU632_RS01620 0.48 -1.0 322,956 + LU632_RS01620 0.52 -0.7 322,956 + LU632_RS01620 0.52 +0.2 322,956 + LU632_RS01620 0.52 +1.2 322,957 - LU632_RS01620 0.52 -1.1 322,957 - LU632_RS01620 0.52 -0.1 322,957 - LU632_RS01620 0.52 -0.7 322,957 - LU632_RS01620 0.52 -0.0 322,957 - LU632_RS01620 0.52 -0.8 322,958 + LU632_RS01620 0.53 -0.5 323,005 + LU632_RS01620 0.61 +0.6 323,005 + LU632_RS01620 0.61 -1.0 323,005 + LU632_RS01620 0.61 -0.1 323,006 - LU632_RS01620 0.61 -0.0 323,006 - LU632_RS01620 0.61 -2.0 323,006 - LU632_RS01620 0.61 +0.6 323,006 - LU632_RS01620 0.61 -2.3 323,012 + LU632_RS01620 0.62 +0.4 323,013 - LU632_RS01620 0.63 -0.5 323,063 + LU632_RS01620 0.72 -0.0 323,084 - LU632_RS01620 0.76 +0.8 323,239 - -2.0 323,283 - LU632_RS01625 0.14 +1.0 323,283 - LU632_RS01625 0.14 -0.4 323,283 - LU632_RS01625 0.14 -0.3 323,283 - LU632_RS01625 0.14 -0.8 323,284 + LU632_RS01625 0.14 +1.5 323,284 + LU632_RS01625 0.14 -0.0 323,284 + LU632_RS01625 0.14 +1.0 323,284 + LU632_RS01625 0.14 -0.2 323,285 - LU632_RS01625 0.14 -0.0 323,285 - LU632_RS01625 0.14 +0.9 323,285 - LU632_RS01625 0.14 -0.4
Or see this region's nucleotide sequence