Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00970

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS00960 and thiE overlap by 11 nucleotidesthiE and thiC overlap by 4 nucleotidesthiC and LU632_RS00975 are separated by 311 nucleotidesLU632_RS00975 and nudC are separated by 85 nucleotides LU632_RS00960: LU632_RS00960 - HesA/MoeB/ThiF family protein, at 208,480 to 209,241 _RS00960 LU632_RS00965: thiE - thiamine phosphate synthase, at 209,231 to 209,878 thiE LU632_RS00970: thiC - phosphomethylpyrimidine synthase ThiC, at 209,875 to 211,809 thiC LU632_RS00975: LU632_RS00975 - Rsd/AlgQ family anti-sigma factor, at 212,121 to 212,630 _RS00975 LU632_RS00980: nudC - NAD(+) diphosphatase, at 212,716 to 213,489 nudC Position (kb) 209 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2at 208.892 kb on - strand, within LU632_RS00960at 209.103 kb on - strand, within LU632_RS00960at 209.176 kb on - strandat 209.212 kb on - strandat 209.432 kb on + strand, within thiEat 209.433 kb on - strand, within thiEat 209.433 kb on - strand, within thiEat 209.488 kb on + strand, within thiEat 209.489 kb on - strand, within thiEat 209.503 kb on + strand, within thiEat 209.504 kb on - strand, within thiEat 209.505 kb on + strand, within thiEat 209.505 kb on + strand, within thiEat 209.505 kb on + strand, within thiEat 209.506 kb on - strand, within thiEat 209.506 kb on - strand, within thiEat 209.609 kb on + strand, within thiEat 209.609 kb on + strand, within thiEat 209.630 kb on + strand, within thiEat 209.630 kb on + strand, within thiEat 209.631 kb on - strand, within thiEat 209.668 kb on - strand, within thiEat 209.668 kb on - strand, within thiEat 209.878 kb on + strandat 209.915 kb on + strandat 209.916 kb on - strandat 210.320 kb on + strand, within thiCat 210.320 kb on + strand, within thiCat 210.320 kb on + strand, within thiCat 210.321 kb on - strand, within thiCat 210.490 kb on + strand, within thiCat 210.491 kb on - strand, within thiCat 210.640 kb on + strand, within thiCat 210.648 kb on - strand, within thiCat 210.782 kb on - strand, within thiCat 210.786 kb on - strand, within thiCat 210.819 kb on - strand, within thiCat 210.819 kb on - strand, within thiCat 210.915 kb on - strand, within thiCat 210.982 kb on - strand, within thiCat 211.122 kb on + strand, within thiCat 211.152 kb on + strand, within thiCat 211.164 kb on + strand, within thiCat 211.329 kb on + strand, within thiCat 211.464 kb on + strand, within thiCat 211.465 kb on - strand, within thiCat 211.465 kb on - strand, within thiCat 211.537 kb on + strand, within thiCat 211.537 kb on + strand, within thiCat 211.537 kb on + strand, within thiCat 211.583 kb on + strand, within thiCat 211.809 kb on + strandat 211.810 kb on - strandat 211.860 kb on + strandat 211.860 kb on + strandat 211.861 kb on - strandat 211.930 kb on + strandat 211.930 kb on + strandat 212.028 kb on + strandat 212.042 kb on + strandat 212.074 kb on - strandat 212.093 kb on - strandat 212.094 kb on - strandat 212.150 kb on + strandat 212.195 kb on + strand, within LU632_RS00975at 212.195 kb on + strand, within LU632_RS00975at 212.198 kb on + strand, within LU632_RS00975at 212.199 kb on - strand, within LU632_RS00975at 212.272 kb on + strand, within LU632_RS00975at 212.273 kb on - strand, within LU632_RS00975at 212.313 kb on + strand, within LU632_RS00975at 212.313 kb on + strand, within LU632_RS00975at 212.314 kb on - strand, within LU632_RS00975at 212.353 kb on + strand, within LU632_RS00975at 212.403 kb on - strand, within LU632_RS00975at 212.414 kb on - strand, within LU632_RS00975at 212.441 kb on - strand, within LU632_RS00975at 212.466 kb on - strand, within LU632_RS00975at 212.530 kb on + strand, within LU632_RS00975at 212.530 kb on + strand, within LU632_RS00975at 212.533 kb on + strand, within LU632_RS00975at 212.533 kb on + strand, within LU632_RS00975at 212.681 kb on - strandat 212.715 kb on + strandat 212.716 kb on - strandat 212.716 kb on - strandat 212.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media
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208,892 - LU632_RS00960 0.54 -1.7
209,103 - LU632_RS00960 0.82 -0.0
209,176 - -1.0
209,212 - +1.0
209,432 + thiE LU632_RS00965 0.31 -0.2
209,433 - thiE LU632_RS00965 0.31 -1.0
209,433 - thiE LU632_RS00965 0.31 -0.6
209,488 + thiE LU632_RS00965 0.40 -0.0
209,489 - thiE LU632_RS00965 0.40 +0.4
209,503 + thiE LU632_RS00965 0.42 -1.2
209,504 - thiE LU632_RS00965 0.42 -0.6
209,505 + thiE LU632_RS00965 0.42 -0.0
209,505 + thiE LU632_RS00965 0.42 -0.0
209,505 + thiE LU632_RS00965 0.42 -0.7
209,506 - thiE LU632_RS00965 0.42 -0.9
209,506 - thiE LU632_RS00965 0.42 -0.9
209,609 + thiE LU632_RS00965 0.58 -1.2
209,609 + thiE LU632_RS00965 0.58 -0.4
209,630 + thiE LU632_RS00965 0.62 -0.8
209,630 + thiE LU632_RS00965 0.62 -0.4
209,631 - thiE LU632_RS00965 0.62 +1.6
209,668 - thiE LU632_RS00965 0.67 +1.0
209,668 - thiE LU632_RS00965 0.67 -0.4
209,878 + -0.0
209,915 + -0.6
209,916 - -0.3
210,320 + thiC LU632_RS00970 0.23 +1.0
210,320 + thiC LU632_RS00970 0.23 -1.0
210,320 + thiC LU632_RS00970 0.23 -1.0
210,321 - thiC LU632_RS00970 0.23 -1.0
210,490 + thiC LU632_RS00970 0.32 -1.2
210,491 - thiC LU632_RS00970 0.32 +0.9
210,640 + thiC LU632_RS00970 0.40 -0.8
210,648 - thiC LU632_RS00970 0.40 +0.7
210,782 - thiC LU632_RS00970 0.47 -0.0
210,786 - thiC LU632_RS00970 0.47 -1.0
210,819 - thiC LU632_RS00970 0.49 +1.6
210,819 - thiC LU632_RS00970 0.49 +1.0
210,915 - thiC LU632_RS00970 0.54 -1.0
210,982 - thiC LU632_RS00970 0.57 -1.1
211,122 + thiC LU632_RS00970 0.64 -0.4
211,152 + thiC LU632_RS00970 0.66 -0.3
211,164 + thiC LU632_RS00970 0.67 -0.4
211,329 + thiC LU632_RS00970 0.75 -0.8
211,464 + thiC LU632_RS00970 0.82 -1.3
211,465 - thiC LU632_RS00970 0.82 -1.0
211,465 - thiC LU632_RS00970 0.82 -2.6
211,537 + thiC LU632_RS00970 0.86 +0.7
211,537 + thiC LU632_RS00970 0.86 -0.0
211,537 + thiC LU632_RS00970 0.86 -1.3
211,583 + thiC LU632_RS00970 0.88 -0.0
211,809 + +0.4
211,810 - -0.0
211,860 + -0.0
211,860 + -0.0
211,861 - -0.4
211,930 + +0.1
211,930 + -0.0
212,028 + -0.2
212,042 + -0.0
212,074 - -0.6
212,093 - -0.9
212,094 - +0.6
212,150 + -0.0
212,195 + LU632_RS00975 0.15 +1.0
212,195 + LU632_RS00975 0.15 +0.6
212,198 + LU632_RS00975 0.15 -1.5
212,199 - LU632_RS00975 0.15 -0.3
212,272 + LU632_RS00975 0.30 -0.1
212,273 - LU632_RS00975 0.30 -0.3
212,313 + LU632_RS00975 0.38 -1.5
212,313 + LU632_RS00975 0.38 +0.4
212,314 - LU632_RS00975 0.38 +0.1
212,353 + LU632_RS00975 0.45 -0.4
212,403 - LU632_RS00975 0.55 +1.6
212,414 - LU632_RS00975 0.57 -0.7
212,441 - LU632_RS00975 0.63 -2.0
212,466 - LU632_RS00975 0.68 -0.3
212,530 + LU632_RS00975 0.80 -0.1
212,530 + LU632_RS00975 0.80 +2.3
212,533 + LU632_RS00975 0.81 -0.6
212,533 + LU632_RS00975 0.81 +1.2
212,681 - -0.0
212,715 + +0.4
212,716 - +1.0
212,716 - -0.4
212,738 + -0.5

Or see this region's nucleotide sequence