Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16555

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS16550 and RPSI07_RS16555 are separated by 0 nucleotidesRPSI07_RS16555 and RPSI07_RS16560 are separated by 39 nucleotides RPSI07_RS16550: RPSI07_RS16550 - hypothetical protein, at 1,874,668 to 1,875,804 _RS16550 RPSI07_RS16555: RPSI07_RS16555 - hypothetical protein, at 1,875,805 to 1,876,260 _RS16555 RPSI07_RS16560: RPSI07_RS16560 - MFS transporter, at 1,876,300 to 1,877,739 _RS16560 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1874.812 kb on + strand, within RPSI07_RS16550at 1874.812 kb on + strand, within RPSI07_RS16550at 1874.816 kb on + strand, within RPSI07_RS16550at 1874.816 kb on + strand, within RPSI07_RS16550at 1874.817 kb on - strand, within RPSI07_RS16550at 1874.817 kb on - strand, within RPSI07_RS16550at 1874.817 kb on - strand, within RPSI07_RS16550at 1874.818 kb on - strand, within RPSI07_RS16550at 1875.139 kb on + strand, within RPSI07_RS16550at 1875.279 kb on + strand, within RPSI07_RS16550at 1875.301 kb on + strand, within RPSI07_RS16550at 1875.302 kb on - strand, within RPSI07_RS16550at 1875.307 kb on + strand, within RPSI07_RS16550at 1875.308 kb on - strand, within RPSI07_RS16550at 1875.308 kb on - strand, within RPSI07_RS16550at 1875.373 kb on + strand, within RPSI07_RS16550at 1875.373 kb on + strand, within RPSI07_RS16550at 1875.685 kb on - strand, within RPSI07_RS16550at 1875.816 kb on + strandat 1875.828 kb on + strandat 1875.859 kb on - strand, within RPSI07_RS16555at 1875.905 kb on - strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.907 kb on - strand, within RPSI07_RS16555at 1875.907 kb on - strand, within RPSI07_RS16555at 1875.907 kb on - strand, within RPSI07_RS16555at 1875.952 kb on + strand, within RPSI07_RS16555at 1876.056 kb on - strand, within RPSI07_RS16555at 1876.359 kb on - strandat 1876.532 kb on + strand, within RPSI07_RS16560at 1876.532 kb on + strand, within RPSI07_RS16560at 1876.541 kb on + strand, within RPSI07_RS16560at 1876.542 kb on - strand, within RPSI07_RS16560at 1876.542 kb on - strand, within RPSI07_RS16560at 1876.694 kb on + strand, within RPSI07_RS16560at 1876.694 kb on + strand, within RPSI07_RS16560at 1876.695 kb on - strand, within RPSI07_RS16560at 1876.749 kb on - strand, within RPSI07_RS16560at 1876.749 kb on - strand, within RPSI07_RS16560at 1876.818 kb on - strand, within RPSI07_RS16560at 1876.818 kb on - strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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1,874,812 + RPSI07_RS16550 0.13 +4.0
1,874,812 + RPSI07_RS16550 0.13 -0.6
1,874,816 + RPSI07_RS16550 0.13 -1.7
1,874,816 + RPSI07_RS16550 0.13 -0.4
1,874,817 - RPSI07_RS16550 0.13 +3.0
1,874,817 - RPSI07_RS16550 0.13 +0.7
1,874,817 - RPSI07_RS16550 0.13 -1.6
1,874,818 - RPSI07_RS16550 0.13 +2.2
1,875,139 + RPSI07_RS16550 0.41 -0.3
1,875,279 + RPSI07_RS16550 0.54 +1.0
1,875,301 + RPSI07_RS16550 0.56 -0.2
1,875,302 - RPSI07_RS16550 0.56 -0.6
1,875,307 + RPSI07_RS16550 0.56 -2.0
1,875,308 - RPSI07_RS16550 0.56 -0.1
1,875,308 - RPSI07_RS16550 0.56 +0.4
1,875,373 + RPSI07_RS16550 0.62 -2.1
1,875,373 + RPSI07_RS16550 0.62 -1.1
1,875,685 - RPSI07_RS16550 0.89 +1.1
1,875,816 + -0.6
1,875,828 + +2.0
1,875,859 - RPSI07_RS16555 0.12 +0.2
1,875,905 - RPSI07_RS16555 0.22 +1.6
1,875,906 + RPSI07_RS16555 0.22 +0.4
1,875,906 + RPSI07_RS16555 0.22 -0.6
1,875,906 + RPSI07_RS16555 0.22 -0.0
1,875,906 + RPSI07_RS16555 0.22 -0.1
1,875,907 - RPSI07_RS16555 0.22 -1.0
1,875,907 - RPSI07_RS16555 0.22 +1.0
1,875,907 - RPSI07_RS16555 0.22 +0.2
1,875,952 + RPSI07_RS16555 0.32 -1.0
1,876,056 - RPSI07_RS16555 0.55 -0.6
1,876,359 - -0.4
1,876,532 + RPSI07_RS16560 0.16 -0.6
1,876,532 + RPSI07_RS16560 0.16 +0.1
1,876,541 + RPSI07_RS16560 0.17 -1.2
1,876,542 - RPSI07_RS16560 0.17 +0.8
1,876,542 - RPSI07_RS16560 0.17 +0.1
1,876,694 + RPSI07_RS16560 0.27 -1.6
1,876,694 + RPSI07_RS16560 0.27 -1.6
1,876,695 - RPSI07_RS16560 0.27 +2.0
1,876,749 - RPSI07_RS16560 0.31 +0.4
1,876,749 - RPSI07_RS16560 0.31 +0.2
1,876,818 - RPSI07_RS16560 0.36 -0.0
1,876,818 - RPSI07_RS16560 0.36 +0.8
1,877,255 + RPSI07_RS16560 0.66 -2.2
1,877,255 + RPSI07_RS16560 0.66 -0.9
1,877,255 + RPSI07_RS16560 0.66 +0.8
1,877,255 + RPSI07_RS16560 0.66 -0.5
1,877,255 + RPSI07_RS16560 0.66 -1.1
1,877,255 + RPSI07_RS16560 0.66 -1.0
1,877,255 + RPSI07_RS16560 0.66 +0.4
1,877,255 + RPSI07_RS16560 0.66 -1.6
1,877,256 - RPSI07_RS16560 0.66 +1.4
1,877,256 - RPSI07_RS16560 0.66 -1.0
1,877,256 - RPSI07_RS16560 0.66 +1.0
1,877,256 - RPSI07_RS16560 0.66 +0.4
1,877,256 - RPSI07_RS16560 0.66 +0.7
1,877,256 - RPSI07_RS16560 0.66 +1.0

Or see this region's nucleotide sequence