Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS08650

Experiment: SMSA no antibiotic control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS24845 and RPSI07_RS08645 overlap by 4 nucleotidesRPSI07_RS08645 and RPSI07_RS08650 are separated by 34 nucleotidesRPSI07_RS08650 and RPSI07_RS08655 are separated by 347 nucleotides RPSI07_RS24845: RPSI07_RS24845 - hypothetical protein, at 178,361 to 178,599 _RS24845 RPSI07_RS08645: RPSI07_RS08645 - hydroxypyruvate isomerase, at 178,596 to 179,378 _RS08645 RPSI07_RS08650: RPSI07_RS08650 - glyoxylate carboligase, at 179,413 to 181,188 _RS08650 RPSI07_RS08655: RPSI07_RS08655 - LysR family transcriptional regulator, at 181,536 to 182,447 _RS08655 Position (kb) 179 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 178.491 kb on - strand, within RPSI07_RS24845at 178.500 kb on + strand, within RPSI07_RS24845at 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.658 kb on - strandat 178.715 kb on + strand, within RPSI07_RS08645at 178.717 kb on + strand, within RPSI07_RS08645at 178.717 kb on + strand, within RPSI07_RS08645at 178.718 kb on - strand, within RPSI07_RS08645at 178.718 kb on - strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.919 kb on - strand, within RPSI07_RS08645at 178.919 kb on - strand, within RPSI07_RS08645at 179.101 kb on + strand, within RPSI07_RS08645at 179.102 kb on - strand, within RPSI07_RS08645at 179.102 kb on - strand, within RPSI07_RS08645at 179.266 kb on + strand, within RPSI07_RS08645at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.720 kb on + strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strandat 179.721 kb on - strand, within RPSI07_RS08650at 179.721 kb on - strand, within RPSI07_RS08650at 179.765 kb on + strand, within RPSI07_RS08650at 179.765 kb on + strand, within RPSI07_RS08650at 179.766 kb on - strand, within RPSI07_RS08650at 179.766 kb on - strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.792 kb on + strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.793 kb on - strand, within RPSI07_RS08650at 179.850 kb on - strand, within RPSI07_RS08650at 179.850 kb on - strand, within RPSI07_RS08650at 180.023 kb on + strand, within RPSI07_RS08650at 180.023 kb on + strand, within RPSI07_RS08650at 180.023 kb on + strand, within RPSI07_RS08650at 180.024 kb on - strand, within RPSI07_RS08650at 180.024 kb on - strand, within RPSI07_RS08650at 180.044 kb on + strand, within RPSI07_RS08650at 180.044 kb on + strand, within RPSI07_RS08650at 180.044 kb on + strand, within RPSI07_RS08650at 180.062 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.312 kb on + strand, within RPSI07_RS08650at 180.314 kb on + strand, within RPSI07_RS08650at 180.314 kb on + strand, within RPSI07_RS08650at 180.314 kb on + strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.315 kb on - strand, within RPSI07_RS08650at 180.638 kb on + strand, within RPSI07_RS08650at 180.638 kb on + strand, within RPSI07_RS08650at 180.638 kb on + strand, within RPSI07_RS08650at 180.656 kb on + strand, within RPSI07_RS08650at 180.656 kb on + strandat 180.656 kb on + strand, within RPSI07_RS08650at 180.657 kb on - strand, within RPSI07_RS08650at 180.657 kb on - strand, within RPSI07_RS08650at 180.860 kb on + strand, within RPSI07_RS08650at 180.860 kb on + strand, within RPSI07_RS08650at 180.927 kb on - strand, within RPSI07_RS08650at 180.927 kb on - strand, within RPSI07_RS08650at 180.927 kb on - strand, within RPSI07_RS08650at 180.927 kb on - strand, within RPSI07_RS08650at 181.005 kb on + strand, within RPSI07_RS08650at 181.005 kb on + strand, within RPSI07_RS08650at 181.005 kb on + strand, within RPSI07_RS08650at 181.006 kb on - strand, within RPSI07_RS08650at 181.006 kb on - strand, within RPSI07_RS08650at 181.006 kb on - strand, within RPSI07_RS08650at 181.006 kb on - strand, within RPSI07_RS08650at 181.006 kb on - strand, within RPSI07_RS08650at 181.006 kb on - strand, within RPSI07_RS08650at 181.007 kb on + strand, within RPSI07_RS08650at 181.007 kb on + strand, within RPSI07_RS08650at 181.008 kb on - strand, within RPSI07_RS08650at 181.008 kb on - strand, within RPSI07_RS08650at 181.089 kb on - strandat 181.089 kb on - strandat 181.089 kb on - strandat 181.414 kb on + strandat 181.415 kb on - strandat 181.415 kb on - strandat 181.950 kb on + strand, within RPSI07_RS08655at 182.142 kb on + strand, within RPSI07_RS08655at 182.143 kb on - strand, within RPSI07_RS08655

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA no antibiotic control
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178,491 - RPSI07_RS24845 0.54 +0.5
178,500 + RPSI07_RS24845 0.58 +0.2
178,657 + +1.4
178,657 + -0.9
178,657 + +0.5
178,657 + +0.4
178,657 + -0.6
178,657 + -0.9
178,658 - -1.1
178,715 + RPSI07_RS08645 0.15 -1.9
178,717 + RPSI07_RS08645 0.15 +0.3
178,717 + RPSI07_RS08645 0.15 -1.0
178,718 - RPSI07_RS08645 0.16 -1.6
178,718 - RPSI07_RS08645 0.16 -1.3
178,840 + RPSI07_RS08645 0.31 -0.6
178,840 + RPSI07_RS08645 0.31 +1.8
178,840 + RPSI07_RS08645 0.31 -1.1
178,840 + RPSI07_RS08645 0.31 -0.3
178,840 + RPSI07_RS08645 0.31 +0.1
178,840 + RPSI07_RS08645 0.31 -1.4
178,840 + RPSI07_RS08645 0.31 +0.4
178,840 + RPSI07_RS08645 0.31 -0.0
178,840 + RPSI07_RS08645 0.31 -1.9
178,840 + RPSI07_RS08645 0.31 -2.2
178,840 + RPSI07_RS08645 0.31 -0.8
178,841 - RPSI07_RS08645 0.31 +0.6
178,841 - RPSI07_RS08645 0.31 -0.2
178,841 - RPSI07_RS08645 0.31 +2.4
178,841 - RPSI07_RS08645 0.31 +0.7
178,841 - RPSI07_RS08645 0.31 +0.9
178,841 - RPSI07_RS08645 0.31 +8.6
178,841 - RPSI07_RS08645 0.31 -0.5
178,841 - RPSI07_RS08645 0.31 +0.7
178,841 - RPSI07_RS08645 0.31 +1.0
178,850 - RPSI07_RS08645 0.32 -1.2
178,850 - RPSI07_RS08645 0.32 +0.1
178,850 - RPSI07_RS08645 0.32 +0.3
178,919 - RPSI07_RS08645 0.41 +1.5
178,919 - RPSI07_RS08645 0.41 +0.7
179,101 + RPSI07_RS08645 0.64 +0.1
179,102 - RPSI07_RS08645 0.65 -0.1
179,102 - RPSI07_RS08645 0.65 -1.8
179,266 + RPSI07_RS08645 0.86 +0.0
179,720 + RPSI07_RS08650 0.17 -0.2
179,720 + RPSI07_RS08650 0.17 -1.3
179,720 + RPSI07_RS08650 0.17 -1.6
179,720 + RPSI07_RS08650 0.17 +0.5
179,720 + RPSI07_RS08650 0.17 -0.3
179,721 - RPSI07_RS08650 0.17 +1.6
179,721 - RPSI07_RS08650 0.17 +0.4
179,721 - RPSI07_RS08650 0.17 +0.4
179,721 - RPSI07_RS08650 0.17 +0.6
179,721 - +1.4
179,721 - RPSI07_RS08650 0.17 +2.6
179,721 - RPSI07_RS08650 0.17 +2.4
179,765 + RPSI07_RS08650 0.20 -0.0
179,765 + RPSI07_RS08650 0.20 -0.1
179,766 - RPSI07_RS08650 0.20 +0.7
179,766 - RPSI07_RS08650 0.20 -0.3
179,792 + RPSI07_RS08650 0.21 +0.4
179,792 + RPSI07_RS08650 0.21 +2.1
179,792 + RPSI07_RS08650 0.21 -1.1
179,792 + RPSI07_RS08650 0.21 +0.1
179,793 - RPSI07_RS08650 0.21 +0.3
179,793 - RPSI07_RS08650 0.21 +1.4
179,793 - RPSI07_RS08650 0.21 +0.4
179,793 - RPSI07_RS08650 0.21 +2.1
179,850 - RPSI07_RS08650 0.25 -1.2
179,850 - RPSI07_RS08650 0.25 -0.6
180,023 + RPSI07_RS08650 0.34 +0.8
180,023 + RPSI07_RS08650 0.34 +0.6
180,023 + RPSI07_RS08650 0.34 -0.2
180,024 - RPSI07_RS08650 0.34 +2.0
180,024 - RPSI07_RS08650 0.34 -2.1
180,044 + RPSI07_RS08650 0.36 +0.0
180,044 + RPSI07_RS08650 0.36 +3.0
180,044 + RPSI07_RS08650 0.36 +1.3
180,062 + RPSI07_RS08650 0.37 -0.2
180,312 + RPSI07_RS08650 0.51 -0.6
180,312 + RPSI07_RS08650 0.51 -0.8
180,312 + RPSI07_RS08650 0.51 +0.1
180,312 + RPSI07_RS08650 0.51 +0.1
180,312 + RPSI07_RS08650 0.51 -0.3
180,312 + RPSI07_RS08650 0.51 +0.7
180,314 + RPSI07_RS08650 0.51 -1.3
180,314 + RPSI07_RS08650 0.51 -2.3
180,314 + RPSI07_RS08650 0.51 +1.7
180,315 - RPSI07_RS08650 0.51 +2.2
180,315 - RPSI07_RS08650 0.51 -0.3
180,315 - RPSI07_RS08650 0.51 +0.5
180,315 - RPSI07_RS08650 0.51 +0.3
180,638 + RPSI07_RS08650 0.69 +0.1
180,638 + RPSI07_RS08650 0.69 -1.7
180,638 + RPSI07_RS08650 0.69 -1.6
180,656 + RPSI07_RS08650 0.70 +0.2
180,656 + +2.6
180,656 + RPSI07_RS08650 0.70 -0.9
180,657 - RPSI07_RS08650 0.70 +0.4
180,657 - RPSI07_RS08650 0.70 +0.3
180,860 + RPSI07_RS08650 0.81 -0.8
180,860 + RPSI07_RS08650 0.81 -0.4
180,927 - RPSI07_RS08650 0.85 -0.7
180,927 - RPSI07_RS08650 0.85 -0.9
180,927 - RPSI07_RS08650 0.85 -0.7
180,927 - RPSI07_RS08650 0.85 -1.4
181,005 + RPSI07_RS08650 0.90 -1.4
181,005 + RPSI07_RS08650 0.90 -0.8
181,005 + RPSI07_RS08650 0.90 -0.1
181,006 - RPSI07_RS08650 0.90 -0.8
181,006 - RPSI07_RS08650 0.90 -0.7
181,006 - RPSI07_RS08650 0.90 -0.5
181,006 - RPSI07_RS08650 0.90 -1.6
181,006 - RPSI07_RS08650 0.90 -1.1
181,006 - RPSI07_RS08650 0.90 -0.1
181,007 + RPSI07_RS08650 0.90 -0.2
181,007 + RPSI07_RS08650 0.90 +0.1
181,008 - RPSI07_RS08650 0.90 -0.2
181,008 - RPSI07_RS08650 0.90 -0.3
181,089 - +2.4
181,089 - +1.2
181,089 - -0.0
181,414 + -0.8
181,415 - -0.2
181,415 - -1.2
181,950 + RPSI07_RS08655 0.45 -2.0
182,142 + RPSI07_RS08655 0.66 +1.2
182,143 - RPSI07_RS08655 0.67 -1.8

Or see this region's nucleotide sequence