Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06875

Experiment: SMSA no antibiotic control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA no antibiotic control
1,830,944	+		RPSI07_RS06870	0.70	-1.4
1,830,944	+		RPSI07_RS06870	0.70	-1.1
1,830,944	+		RPSI07_RS06870	0.70	-0.6
1,830,944	+		RPSI07_RS06870	0.70	+0.5
1,831,109	+				+2.3
1,831,109	+				-1.3
1,831,109	+				-1.7
1,831,173	+				+0.5
1,831,174	-				-0.2
1,831,347	+		RPSI07_RS24665	0.23	+0.1
1,831,347	+		RPSI07_RS24665	0.23	-0.7
1,831,348	-		RPSI07_RS24665	0.23	+0.1
1,831,348	-		RPSI07_RS24665	0.23	+0.3
1,831,440	+		RPSI07_RS24665	0.35	-0.7
1,831,455	+		RPSI07_RS24665	0.37	-1.5
1,831,456	-		RPSI07_RS24665	0.37	+0.2
1,831,535	+		RPSI07_RS24665	0.48	+1.1
1,831,536	-		RPSI07_RS24665	0.48	-0.7
1,831,536	-		RPSI07_RS24665	0.48	+0.9
1,831,580	+		RPSI07_RS24665	0.54	-1.2
1,831,580	+		RPSI07_RS24665	0.54	+0.1
1,831,580	+		RPSI07_RS24665	0.54	+0.1
1,831,580	+		RPSI07_RS24665	0.54	-1.5
1,831,580	+		RPSI07_RS24665	0.54	-1.9
1,831,581	-		RPSI07_RS24665	0.54	-2.0
1,831,581	-		RPSI07_RS24665	0.54	-2.2
1,831,581	-				+0.0
1,831,588	-				-1.5
1,831,640	+		RPSI07_RS24665	0.62	+0.4
1,831,640	+		RPSI07_RS24665	0.62	+1.1
1,831,640	+		RPSI07_RS24665	0.62	-1.9
1,831,641	-		RPSI07_RS24665	0.62	-1.9
1,831,675	+		RPSI07_RS24665	0.67	+0.1
1,831,675	+		RPSI07_RS24665	0.67	-0.9
1,831,675	+		RPSI07_RS24665	0.67	+1.1
1,831,676	-		RPSI07_RS24665	0.67	-1.0
1,831,676	-		RPSI07_RS24665	0.67	-1.3
1,831,676	-		RPSI07_RS24665	0.67	-0.6
1,831,676	-		RPSI07_RS24665	0.67	-2.3
1,831,678	+		RPSI07_RS24665	0.67	+1.1
1,831,719	+		RPSI07_RS24665	0.73	-0.0
1,831,719	+		RPSI07_RS24665	0.73	+1.1
1,831,719	+		RPSI07_RS24665	0.73	-1.6
1,831,720	-		RPSI07_RS24665	0.73	+1.1
1,831,752	+		RPSI07_RS24665	0.78	-0.9
1,831,909	-				+0.4
1,831,990	+				+1.2
1,831,990	+				-1.3
1,831,990	+				+3.1
1,831,991	-				+0.1
1,831,991	-				-1.7
1,831,991	-				-1.3
1,832,025	-		RPSI07_RS06875	0.13	+0.7
1,832,264	-		RPSI07_RS06875	0.40	+0.7
1,832,264	-		RPSI07_RS06875	0.40	-2.4
1,832,264	-		RPSI07_RS06875	0.40	-0.5
1,832,264	-		RPSI07_RS06875	0.40	-0.1
1,832,264	-		RPSI07_RS06875	0.40	-1.1
1,832,292	-		RPSI07_RS06875	0.43	-0.5
1,832,320	+		RPSI07_RS06875	0.46	-0.1
1,832,320	+		RPSI07_RS06875	0.46	+1.5
1,832,320	+		RPSI07_RS06875	0.46	+0.5
1,832,320	+		RPSI07_RS06875	0.46	-0.9
1,832,320	+		RPSI07_RS06875	0.46	+0.5
1,832,320	+		RPSI07_RS06875	0.46	-1.9
1,832,320	+		RPSI07_RS06875	0.46	-0.0
1,832,393	-		RPSI07_RS06875	0.54	-0.2
1,832,393	-		RPSI07_RS06875	0.54	-1.8
1,832,393	-		RPSI07_RS06875	0.54	+0.3
1,832,532	+		RPSI07_RS06875	0.70	+2.1
1,832,533	+		RPSI07_RS06875	0.70	+3.4
1,832,533	+		RPSI07_RS06875	0.70	-0.4
1,832,533	+		RPSI07_RS06875	0.70	-0.8
1,832,533	+		RPSI07_RS06875	0.70	+0.1
1,832,533	+		RPSI07_RS06875	0.70	+0.4
1,832,533	+		RPSI07_RS06875	0.70	-1.4
1,832,533	+		RPSI07_RS06875	0.70	-0.7
1,832,533	+		RPSI07_RS06875	0.70	+0.9
1,832,534	-		RPSI07_RS06875	0.71	-0.9
1,832,534	-		RPSI07_RS06875	0.71	-1.8
1,832,534	-		RPSI07_RS06875	0.71	+0.1
1,832,534	-		RPSI07_RS06875	0.71	-1.5
1,832,534	-		RPSI07_RS06875	0.71	+0.3
1,832,534	-		RPSI07_RS06875	0.71	-1.3
1,832,534	-		RPSI07_RS06875	0.71	+0.1
1,832,534	-		RPSI07_RS06875	0.71	-0.1
1,832,534	-		RPSI07_RS06875	0.71	-0.9
1,832,534	-		RPSI07_RS06875	0.71	-0.9
1,832,534	-		RPSI07_RS06875	0.71	+0.6
1,832,534	-		RPSI07_RS06875	0.71	-0.4
1,832,587	+		RPSI07_RS06875	0.77	+0.3
1,832,587	+		RPSI07_RS06875	0.77	-0.8
1,832,587	+		RPSI07_RS06875	0.77	-1.5
1,832,587	+		RPSI07_RS06875	0.77	+0.8
1,832,587	+		RPSI07_RS06875	0.77	+0.5
1,832,587	+		RPSI07_RS06875	0.77	+1.7
1,832,588	-		RPSI07_RS06875	0.77	-0.9
1,832,588	-		RPSI07_RS06875	0.77	+0.7
1,832,588	-		RPSI07_RS06875	0.77	+2.0
1,832,588	-		RPSI07_RS06875	0.77	-0.2
1,832,588	-		RPSI07_RS06875	0.77	-1.4
1,832,588	-		RPSI07_RS06875	0.77	-0.6
1,832,588	-		RPSI07_RS06875	0.77	+0.5
1,832,588	-		RPSI07_RS06875	0.77	-1.1
1,832,588	-		RPSI07_RS06875	0.77	+1.3
1,832,588	-		RPSI07_RS06875	0.77	+1.9
1,832,588	-		RPSI07_RS06875	0.77	+2.1
1,832,596	+		RPSI07_RS06875	0.78	-1.2
1,832,596	+		RPSI07_RS06875	0.78	-0.1
1,832,596	+		RPSI07_RS06875	0.78	-0.9
1,832,596	+		RPSI07_RS06875	0.78	+0.9
1,832,596	+		RPSI07_RS06875	0.78	-0.9
1,832,596	+		RPSI07_RS06875	0.78	-1.5
1,832,596	+		RPSI07_RS06875	0.78	+0.1
1,832,597	-		RPSI07_RS06875	0.78	+0.1
1,832,597	-		RPSI07_RS06875	0.78	+0.4
1,832,638	+		RPSI07_RS06875	0.82	-0.6
1,832,638	+		RPSI07_RS06875	0.82	-0.4
1,832,638	+		RPSI07_RS06875	0.82	-1.2
1,832,638	+		RPSI07_RS06875	0.82	-1.7
1,832,638	+		RPSI07_RS06875	0.82	-0.0
1,832,638	+		RPSI07_RS06875	0.82	-1.1
1,832,639	-		RPSI07_RS06875	0.82	-0.4
1,832,639	-		RPSI07_RS06875	0.82	-1.9
1,832,639	-		RPSI07_RS06875	0.82	-0.2
1,832,639	-		RPSI07_RS06875	0.82	-0.7
1,832,639	-		RPSI07_RS06875	0.82	-1.1
1,832,684	+		RPSI07_RS06875	0.88	-0.1
1,832,684	+		RPSI07_RS06875	0.88	-0.7
1,832,684	+		RPSI07_RS06875	0.88	+0.7
1,832,684	+		RPSI07_RS06875	0.88	-2.0
1,832,684	+		RPSI07_RS06875	0.88	+0.1
1,832,684	+		RPSI07_RS06875	0.88	-0.5
1,832,684	+		RPSI07_RS06875	0.88	-0.0
1,832,685	-		RPSI07_RS06875	0.88	-0.1
1,832,685	-		RPSI07_RS06875	0.88	+1.1
1,832,685	-		RPSI07_RS06875	0.88	-0.1
1,832,685	-		RPSI07_RS06875	0.88	+0.2
1,832,685	-		RPSI07_RS06875	0.88	+1.0
1,832,685	-		RPSI07_RS06875	0.88	+0.2
1,832,703	+		RPSI07_RS06875	0.90	-1.0
1,832,729	+				-0.7
1,832,729	+				-0.4
1,832,729	+				-1.3
1,832,729	+				+1.1
1,832,730	-				-0.0
1,832,746	+				-1.1
1,832,747	-				+1.5
1,832,747	-				+1.8
1,832,747	-				+0.2
1,832,747	-				-0.1
1,832,813	-				+0.3
1,832,813	-				+0.3
1,832,813	-				+0.1
1,832,813	-				-2.0
1,832,813	-				-0.2
1,832,865	+				-0.0
1,832,865	+				-2.0
1,832,866	-				+1.1
1,832,866	-				-0.5
1,832,866	-				+0.6
1,832,867	-				+2.1
1,832,872	+				+0.3
1,832,873	-				+0.7
1,832,873	-				-0.7
1,832,873	-				+0.3
1,832,893	-				+1.5
1,833,069	+				+0.4
1,833,069	+				+0.1
1,833,069	+				-0.5
1,833,069	+				-0.5
1,833,069	+				-0.9
1,833,069	+				-0.7
1,833,069	+				+0.0
1,833,069	+				-2.5
1,833,069	+				+0.7
1,833,070	-				-1.0
1,833,070	-				-0.8
1,833,070	-				+0.5
1,833,070	-				+0.1
1,833,070	-				+1.1
1,833,070	-				+0.7
1,833,258	+				-0.9
1,833,259	-				-0.7
1,833,273	+				-0.3
1,833,281	-				+0.8
1,833,295	+				+2.1
1,833,295	+				+0.4
1,833,317	+				-0.0
1,833,318	-				-0.9
1,833,318	-				+0.5
1,833,324	-				+0.2
1,833,365	-				-1.2
1,833,402	+				+0.2
1,833,403	-				-0.4
1,833,413	+				+1.1
1,833,413	+				+1.6
1,833,413	+				+0.9
1,833,413	+				+0.3
1,833,413	+				+1.7
1,833,414	-				-0.1
1,833,414	-				-0.0
1,833,414	-				+0.3
1,833,414	-				+0.0
1,833,414	-				+0.5
1,833,414	-				-2.9
1,833,495	+		RPSI07_RS24670	0.17	-2.3
1,833,496	-		RPSI07_RS24670	0.17	-0.4
1,833,498	+		RPSI07_RS24670	0.17	-0.9
1,833,498	+		RPSI07_RS24670	0.17	-1.0
1,833,498	+		RPSI07_RS24670	0.17	-0.9
1,833,499	-		RPSI07_RS24670	0.17	+0.2
1,833,520	+		RPSI07_RS24670	0.21	+0.9
1,833,560	+		RPSI07_RS24670	0.29	+0.1
1,833,560	+		RPSI07_RS24670	0.29	+0.2
1,833,560	+		RPSI07_RS24670	0.29	-0.6
1,833,561	-		RPSI07_RS24670	0.29	+0.2
1,833,569	+		RPSI07_RS24670	0.30	+0.0
1,833,569	+		RPSI07_RS24670	0.30	-0.6
1,833,612	+		RPSI07_RS24670	0.38	-1.1
1,833,613	-		RPSI07_RS24670	0.38	+1.0
1,833,636	+		RPSI07_RS24670	0.42	+0.4
1,833,687	+		RPSI07_RS24670	0.52	-1.0
1,833,687	+		RPSI07_RS24670	0.52	-0.4
1,833,688	-		RPSI07_RS24670	0.52	-1.4
1,833,705	+		RPSI07_RS24670	0.55	-0.9
1,833,775	+		RPSI07_RS24670	0.68	-1.1