Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05805

Experiment: SMSA no antibiotic control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA no antibiotic control
1,581,054	+				+2.7
1,581,203	+		RPSI07_RS24520	0.28	-0.5
1,581,205	+		RPSI07_RS24520	0.29	+1.1
1,581,205	+		RPSI07_RS24520	0.29	-0.6
1,581,205	+		RPSI07_RS24520	0.29	+0.3
1,581,205	+		RPSI07_RS24520	0.29	+2.7
1,581,205	+		RPSI07_RS24520	0.29	+1.1
1,581,205	+		RPSI07_RS24520	0.29	-2.2
1,581,206	-		RPSI07_RS24520	0.29	+0.4
1,581,206	-		RPSI07_RS24520	0.29	-1.8
1,581,206	-		RPSI07_RS24520	0.29	-1.6
1,581,206	-		RPSI07_RS24520	0.29	-0.9
1,581,206	-		RPSI07_RS24520	0.29	+0.5
1,581,206	-		RPSI07_RS24520	0.29	-0.5
1,581,206	-		RPSI07_RS24520	0.29	+1.9
1,581,206	-		RPSI07_RS24520	0.29	+0.4
1,581,206	-		RPSI07_RS24520	0.29	-2.0
1,581,206	-		RPSI07_RS24520	0.29	-0.8
1,581,206	-		RPSI07_RS24520	0.29	-0.6
1,581,206	-		RPSI07_RS24520	0.29	-1.2
1,581,216	-		RPSI07_RS24520	0.35	-1.9
1,581,216	-		RPSI07_RS24520	0.35	+0.1
1,581,311	+		RPSI07_RS24520	0.88	-0.0
1,581,312	-		RPSI07_RS24520	0.88	+2.7
1,581,341	+				-0.5
1,581,341	+				+0.3
1,581,354	+				-1.8
1,581,354	+				-0.3
1,581,355	-				-1.2
1,581,418	+				+2.7
1,581,419	-				+0.4
1,581,430	-				-0.4
1,581,504	-				-0.7
1,581,504	-				+0.3
1,581,512	+				-0.6
1,581,513	-				-0.6
1,581,513	-				-1.9
1,581,539	-				-0.5
1,581,539	-				-0.2
1,581,539	-				-0.0
1,581,591	+				+0.5
1,581,592	-				-1.0
1,581,592	-				-2.6
1,581,592	-				+0.2
1,581,667	+				+0.3
1,581,667	+				+0.2
1,581,667	+				-0.2
1,581,667	+				+0.6
1,581,667	+				+0.5
1,581,668	-				+0.2
1,581,668	-				+2.7
1,581,670	+				-0.7
1,581,670	+				-1.2
1,581,670	+				+0.6
1,581,670	+				+1.1
1,581,670	+				+0.4
1,581,670	+				-0.4
1,581,671	-				+2.1
1,581,671	-				-0.4
1,581,671	-				+0.1
1,581,671	-				+0.2
1,581,671	-				-0.0
1,581,671	-				-1.0
1,581,671	-				+1.7
1,581,673	+				+1.1
1,581,673	+				+0.3
1,581,673	+				+0.5
1,581,673	+				+0.5
1,581,674	-				+0.3
1,581,674	-				+0.1
1,581,674	-				-0.2
1,581,685	+				+0.9
1,581,686	-				-0.0
1,581,694	+				+3.1
1,581,694	+				-1.5
1,581,694	+				-1.3
1,581,697	+				+0.4
1,581,767	+				-3.4
1,581,768	-				+1.5
1,581,768	-				-0.6
1,582,037	+				+1.1
1,582,037	+				+3.9
1,582,037	+				+0.4
1,582,037	+				+2.7
1,582,037	+				+0.9
1,582,038	-				+1.1
1,582,038	-				-0.0
1,582,038	-				-0.9
1,582,038	-				+1.5
1,582,038	-				-0.7
1,582,038	-				-1.2
1,582,038	-				+0.5
1,582,038	-				-0.9
1,582,095	+		RPSI07_RS05805	0.10	-1.0
1,582,095	+		RPSI07_RS05805	0.10	-0.5
1,582,095	+		RPSI07_RS05805	0.10	+3.1
1,582,095	+		RPSI07_RS05805	0.10	+0.1
1,582,095	+		RPSI07_RS05805	0.10	-0.5
1,582,096	-		RPSI07_RS05805	0.11	-0.1
1,582,096	-		RPSI07_RS05805	0.11	-1.1
1,582,096	-		RPSI07_RS05805	0.11	-0.6
1,582,096	-		RPSI07_RS05805	0.11	+1.0
1,582,164	+		RPSI07_RS05805	0.17	-0.2
1,582,225	+		RPSI07_RS05805	0.23	-0.5
1,582,227	+		RPSI07_RS05805	0.23	+0.4
1,582,227	+		RPSI07_RS05805	0.23	+0.2
1,582,228	-		RPSI07_RS05805	0.23	-0.3
1,582,228	-		RPSI07_RS05805	0.23	+0.1
1,582,228	-		RPSI07_RS05805	0.23	-0.5
1,582,228	-		RPSI07_RS05805	0.23	-0.1
1,582,239	+		RPSI07_RS05805	0.24	+0.7
1,582,239	+		RPSI07_RS05805	0.24	+1.1
1,582,239	+		RPSI07_RS05805	0.24	-0.7
1,582,239	+		RPSI07_RS05805	0.24	+0.5
1,582,240	-		RPSI07_RS05805	0.24	-1.4
1,582,240	-		RPSI07_RS05805	0.24	+1.5
1,582,419	+		RPSI07_RS05805	0.41	-0.0
1,582,419	+		RPSI07_RS05805	0.41	-1.2
1,582,419	+		RPSI07_RS05805	0.41	-0.0
1,582,419	+		RPSI07_RS05805	0.41	-0.0
1,582,560	+		RPSI07_RS05805	0.55	+1.0
1,582,561	-		RPSI07_RS05805	0.55	-0.4
1,582,594	+		RPSI07_RS05805	0.58	-0.0
1,582,594	+		RPSI07_RS05805	0.58	-1.8
1,582,594	+		RPSI07_RS05805	0.58	-2.7
1,582,595	-		RPSI07_RS05805	0.58	-1.7
1,582,595	-		RPSI07_RS05805	0.58	-1.0
1,582,636	-		RPSI07_RS05805	0.62	+0.4
1,582,636	-		RPSI07_RS05805	0.62	+0.4
1,582,669	-		RPSI07_RS05805	0.65	+0.6
1,582,737	+		RPSI07_RS05805	0.72	+0.2
1,582,737	+		RPSI07_RS05805	0.72	+1.1
1,582,737	+		RPSI07_RS05805	0.72	+0.5
1,582,737	+		RPSI07_RS05805	0.72	+0.1
1,582,738	-		RPSI07_RS05805	0.72	+0.9
1,582,738	-		RPSI07_RS05805	0.72	+0.4
1,582,738	-		RPSI07_RS05805	0.72	-0.4
1,582,738	-		RPSI07_RS05805	0.72	-0.1
1,582,738	-		RPSI07_RS05805	0.72	+0.1
1,582,738	-		RPSI07_RS05805	0.72	+0.1
1,582,851	+		RPSI07_RS05805	0.83	-0.4
1,582,851	+		RPSI07_RS05805	0.83	-0.0
1,582,851	+		RPSI07_RS05805	0.83	+0.0
1,582,851	+		RPSI07_RS05805	0.83	+0.2
1,582,851	+		RPSI07_RS05805	0.83	-0.7
1,582,852	-		RPSI07_RS05805	0.83	+0.1
1,582,854	+		RPSI07_RS05805	0.83	-1.2
1,582,854	+		RPSI07_RS05805	0.83	-0.0
1,582,854	+		RPSI07_RS05805	0.83	-2.4
1,582,854	+		RPSI07_RS05805	0.83	+4.2
1,582,854	+		RPSI07_RS05805	0.83	-0.8
1,582,854	+		RPSI07_RS05805	0.83	+1.1
1,582,854	+		RPSI07_RS05805	0.83	-0.4
1,582,855	-		RPSI07_RS05805	0.83	+0.6
1,582,855	-		RPSI07_RS05805	0.83	+0.3
1,582,855	-		RPSI07_RS05805	0.83	+0.5
1,582,855	-		RPSI07_RS05805	0.83	-1.1
1,582,855	-		RPSI07_RS05805	0.83	+0.6
1,582,855	-		RPSI07_RS05805	0.83	-0.5
1,582,855	-		RPSI07_RS05805	0.83	+0.3
1,582,855	-		RPSI07_RS05805	0.83	-0.9
1,582,855	-		RPSI07_RS05805	0.83	+0.9
1,582,855	-		RPSI07_RS05805	0.83	+0.8
1,582,855	-		RPSI07_RS05805	0.83	-0.2
1,582,855	-		RPSI07_RS05805	0.83	+0.0
1,582,855	-		RPSI07_RS05805	0.83	-2.4
1,583,021	+				+0.2
1,583,021	+				-0.7
1,583,021	+				+0.1
1,583,022	-				+0.1
1,583,022	-				-0.1
1,583,022	-				+0.1
1,583,022	-				-0.2
1,583,022	-				+1.5
1,583,032	+				-0.4
1,583,032	+				+0.2
1,583,032	+				-0.3
1,583,033	-				+0.4
1,583,033	-				-0.3
1,583,033	-				+0.1
1,583,033	-				+0.8
1,583,056	+				-0.9
1,583,056	+				-0.7
1,583,056	+				-0.7
1,583,056	+				+0.3
1,583,056	+				-0.4
1,583,056	+				+0.6
1,583,057	-				-0.6
1,583,057	-				-0.0
1,583,168	+				+2.3
1,583,322	-				+1.1
1,583,362	+				-1.0
1,583,396	+				-0.7
1,583,396	+				-0.1
1,583,600	-				-0.8
1,583,600	-				-0.2
1,583,600	-				-1.2
1,583,600	-				-0.6
1,583,606	-				+1.1
1,583,606	-				+1.1
1,583,988	+		RPSI07_RS05815	0.33	-1.4
1,584,029	+		RPSI07_RS05815	0.45	+1.5
1,584,029	+		RPSI07_RS05815	0.45	+0.0
1,584,029	+		RPSI07_RS05815	0.45	-0.9
1,584,029	+		RPSI07_RS05815	0.45	+0.0
1,584,029	+		RPSI07_RS05815	0.45	-1.0
1,584,029	+		RPSI07_RS05815	0.45	+2.0
1,584,029	+		RPSI07_RS05815	0.45	-1.2
1,584,030	-		RPSI07_RS05815	0.45	+2.7
1,584,030	-		RPSI07_RS05815	0.45	+1.1
1,584,030	-		RPSI07_RS05815	0.45	-0.4