Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS13280

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
1,165,349	-		RPSI07_RS13275	0.68	+0.7
1,165,588	+		RPSI07_RS13275	0.76	-0.1
1,165,589	-		RPSI07_RS13275	0.76	-0.8
1,165,589	-		RPSI07_RS13275	0.76	+0.3
1,165,589	-		RPSI07_RS13275	0.76	-1.1
1,165,589	-		RPSI07_RS13275	0.76	-0.4
1,165,589	-		RPSI07_RS13275	0.76	+0.6
1,165,590	+		RPSI07_RS13275	0.76	-0.4
1,165,590	+		RPSI07_RS13275	0.76	+0.7
1,165,590	+		RPSI07_RS13275	0.76	+0.7
1,165,590	+		RPSI07_RS13275	0.76	-0.7
1,165,591	-		RPSI07_RS13275	0.76	-1.6
1,165,612	+		RPSI07_RS13275	0.77	+0.8
1,165,613	-		RPSI07_RS13275	0.77	-2.3
1,165,613	-		RPSI07_RS13275	0.77	-0.6
1,165,615	+		RPSI07_RS13275	0.77	+2.2
1,165,615	+		RPSI07_RS13275	0.77	-0.3
1,165,616	-		RPSI07_RS13275	0.77	+0.5
1,165,616	-		RPSI07_RS13275	0.77	+0.9
1,165,656	+		RPSI07_RS13275	0.78	+1.5
1,165,657	-		RPSI07_RS13275	0.78	+0.5
1,165,684	-		RPSI07_RS13275	0.79	+1.1
1,165,684	-		RPSI07_RS13275	0.79	-0.8
1,165,684	-		RPSI07_RS13275	0.79	-1.1
1,165,687	+		RPSI07_RS13275	0.79	-1.3
1,165,687	+		RPSI07_RS13275	0.79	-0.8
1,165,690	+		RPSI07_RS13275	0.80	-1.1
1,165,690	+		RPSI07_RS13275	0.80	+0.2
1,165,690	+		RPSI07_RS13275	0.80	+0.3
1,165,690	+		RPSI07_RS13275	0.80	+1.2
1,165,691	-		RPSI07_RS13275	0.80	-0.2
1,165,691	-		RPSI07_RS13275	0.80	+0.6
1,165,691	-		RPSI07_RS13275	0.80	-1.4
1,165,699	+		RPSI07_RS13275	0.80	+0.5
1,165,699	+		RPSI07_RS13275	0.80	+2.8
1,165,699	+		RPSI07_RS13275	0.80	+3.8
1,165,699	+		RPSI07_RS13275	0.80	+0.4
1,165,700	-		RPSI07_RS13275	0.80	+1.0
1,165,700	-		RPSI07_RS13275	0.80	+0.4
1,165,700	-		RPSI07_RS13275	0.80	-1.3
1,165,744	+		RPSI07_RS13275	0.81	+0.4
1,165,744	+		RPSI07_RS13275	0.81	+0.1
1,165,745	-		RPSI07_RS13275	0.82	-0.6
1,165,781	-		RPSI07_RS13275	0.83	+0.6
1,165,781	-		RPSI07_RS13275	0.83	+0.8
1,165,792	+		RPSI07_RS13275	0.83	-0.8
1,165,792	+		RPSI07_RS13275	0.83	-0.4
1,165,792	+		RPSI07_RS13275	0.83	+0.5
1,165,793	-		RPSI07_RS13275	0.83	-0.2
1,165,793	-		RPSI07_RS13275	0.83	+1.6
1,165,793	-		RPSI07_RS13275	0.83	-1.0
1,165,963	+		RPSI07_RS13275	0.89	-0.2
1,165,963	+		RPSI07_RS13275	0.89	+0.5
1,165,963	+		RPSI07_RS13275	0.89	+0.4
1,165,964	-		RPSI07_RS13275	0.89	+0.6
1,165,964	-		RPSI07_RS13275	0.89	-0.1
1,165,964	-		RPSI07_RS13275	0.89	-2.1
1,165,964	-		RPSI07_RS13275	0.89	+0.1
1,166,110	+				+0.6
1,166,110	+				+1.8
1,166,110	+				-0.5
1,166,111	-				-1.1
1,166,245	+				-0.4
1,166,420	+				+1.1
1,166,420	+				-0.8
1,166,420	+				-0.5
1,166,421	-				+0.5
1,166,486	+				+0.3
1,166,486	+				+0.1
1,166,486	+				+0.2
1,166,486	+				-0.2
1,166,487	-				-2.1
1,166,487	-				-0.4
1,166,487	-				+0.1
1,166,487	-				+0.2
1,166,487	-				+0.8
1,166,487	-				+1.4
1,166,645	+				+0.9
1,166,645	+				-0.0
1,166,646	-				-0.4
1,166,646	-				+0.8
1,166,768	+		RPSI07_RS13280	0.13	-0.6
1,166,852	+		RPSI07_RS13280	0.15	+1.2
1,166,853	-		RPSI07_RS13280	0.15	-0.9
1,166,853	-		RPSI07_RS13280	0.15	-0.2
1,166,921	+		RPSI07_RS13280	0.17	+0.3
1,166,922	-		RPSI07_RS13280	0.17	+0.1
1,167,083	+		RPSI07_RS13280	0.21	-0.4
1,167,084	-		RPSI07_RS13280	0.21	+0.1
1,167,340	+		RPSI07_RS13280	0.27	-0.0
1,167,365	+		RPSI07_RS13280	0.28	+0.6
1,167,365	+		RPSI07_RS13280	0.28	-0.8
1,167,365	+		RPSI07_RS13280	0.28	+1.7
1,167,366	-		RPSI07_RS13280	0.28	-0.8
1,167,366	-		RPSI07_RS13280	0.28	-0.2
1,167,366	-		RPSI07_RS13280	0.28	+0.1
1,167,366	-		RPSI07_RS13280	0.28	+1.1
1,167,366	-		RPSI07_RS13280	0.28	+0.0
1,167,536	+		RPSI07_RS13280	0.32	+2.0
1,167,537	-		RPSI07_RS13280	0.32	-1.4
1,167,614	+		RPSI07_RS13280	0.34	+3.5
1,167,689	+		RPSI07_RS13280	0.36	-0.8
1,167,726	-		RPSI07_RS13280	0.37	+1.9
1,167,776	+		RPSI07_RS13280	0.38	+0.0
1,167,818	+		RPSI07_RS13280	0.39	+0.3
1,167,893	+		RPSI07_RS13280	0.41	+1.6
1,167,893	+		RPSI07_RS13280	0.41	+0.7
1,167,893	+		RPSI07_RS13280	0.41	+0.1
1,167,893	+		RPSI07_RS13280	0.41	-0.9
1,167,893	+		RPSI07_RS13280	0.41	+1.0
1,167,893	+		RPSI07_RS13280	0.41	+0.4
1,167,893	+		RPSI07_RS13280	0.41	+3.5
1,167,894	-		RPSI07_RS13280	0.41	+0.2
1,167,971	+		RPSI07_RS13280	0.43	+2.0
1,167,971	+		RPSI07_RS13280	0.43	-0.6
1,167,972	-		RPSI07_RS13280	0.43	+2.8
1,168,035	-		RPSI07_RS13280	0.44	+3.5
1,168,035	-		RPSI07_RS13280	0.44	-0.4
1,168,035	-		RPSI07_RS13280	0.44	+0.5
1,168,098	-		RPSI07_RS13280	0.46	-0.6
1,168,098	-		RPSI07_RS13280	0.46	-0.1
1,168,184	+		RPSI07_RS13280	0.48	-0.3
1,168,184	+		RPSI07_RS13280	0.48	+1.7
1,168,185	-		RPSI07_RS13280	0.48	+2.2
1,168,187	+		RPSI07_RS13280	0.48	+0.3
1,168,188	-		RPSI07_RS13280	0.48	+1.6
1,168,190	+		RPSI07_RS13280	0.48	+2.2
1,168,191	-		RPSI07_RS13280	0.48	+0.6
1,168,302	-		RPSI07_RS13280	0.51	-3.4
1,168,302	-		RPSI07_RS13280	0.51	-0.8
1,168,304	+		RPSI07_RS13280	0.51	+0.2
1,168,497	-		RPSI07_RS13280	0.56	-0.3
1,168,497	-		RPSI07_RS13280	0.56	+0.4
1,168,497	-		RPSI07_RS13280	0.56	+0.0
1,168,598	+		RPSI07_RS13280	0.58	-1.9
1,169,372	+		RPSI07_RS13280	0.78	-1.1
1,169,373	-		RPSI07_RS13280	0.78	+1.1
1,169,373	-		RPSI07_RS13280	0.78	+0.4
1,169,393	+		RPSI07_RS13280	0.78	-0.4
1,169,438	+		RPSI07_RS13280	0.79	+2.4
1,169,438	+		RPSI07_RS13280	0.79	-0.9
1,169,439	-		RPSI07_RS13280	0.79	-1.3
1,169,439	-		RPSI07_RS13280	0.79	+0.1
1,169,479	+		RPSI07_RS13280	0.80	+2.0
1,169,480	-		RPSI07_RS13280	0.80	+1.5
1,169,557	+		RPSI07_RS13280	0.82	+0.8
1,169,557	+		RPSI07_RS13280	0.82	-0.0
1,169,557	+		RPSI07_RS13280	0.82	+2.2
1,169,558	-		RPSI07_RS13280	0.82	+1.0
1,169,768	+		RPSI07_RS13280	0.88	+0.7
1,169,768	+		RPSI07_RS13280	0.88	+1.7
1,169,768	+		RPSI07_RS13280	0.88	+0.2
1,169,768	+		RPSI07_RS13280	0.88	+0.6
1,169,768	+		RPSI07_RS13280	0.88	-1.4
1,169,768	+		RPSI07_RS13280	0.88	+0.8
1,169,768	+		RPSI07_RS13280	0.88	+0.2
1,169,769	-		RPSI07_RS13280	0.88	+0.8
1,169,801	+		RPSI07_RS13280	0.88	+1.0
1,169,801	+		RPSI07_RS13280	0.88	-0.1
1,169,801	+		RPSI07_RS13280	0.88	+0.5
1,169,802	-		RPSI07_RS13280	0.88	+1.1
1,169,885	+				-1.7
1,169,885	+				-0.8
1,169,885	+				+0.0
1,169,886	-				-0.7
1,169,887	+				+0.5
1,169,887	+				+0.7
1,169,887	+				+2.2
1,169,887	+				-0.4
1,169,887	+				+2.9
1,169,888	-				-0.4
1,169,888	-				+0.9
1,169,888	-				+1.2
1,169,888	-				+1.0
1,169,888	-				-0.3
1,169,888	-				+0.9
1,169,888	-				+0.5
1,169,888	-				-1.0
1,169,909	+				-0.1
1,169,909	+				-0.1
1,169,910	-				+2.2
1,169,910	-				+0.6
1,169,910	-				-0.7
1,169,919	-				+0.3
1,169,919	-				+0.2
1,170,017	+				+1.8
1,170,018	-				+3.6
1,170,018	-				-2.5
1,170,047	+				+0.2
1,170,047	+				-0.6
1,170,048	-				-1.1
1,170,059	+				+1.8
1,170,182	+				+2.0
1,170,182	+				-3.0
1,170,183	-				-2.1
1,170,183	-				+1.8
1,170,183	-				-0.5
1,170,183	-				-1.1
1,170,183	-				+1.7
1,170,184	+				+1.4
1,170,257	+				+0.8
1,170,258	-				+0.2
1,170,258	-				+3.0
1,170,258	-				+0.4
1,170,258	-				+1.2
1,170,474	+		RPSI07_RS13285	0.29	+1.3
1,170,475	-		RPSI07_RS13285	0.30	+0.6
1,170,690	+		RPSI07_RS13285	0.68	+0.6
1,170,690	+		RPSI07_RS13285	0.68	-0.1
1,171,220	+		RPSI07_RS13290	0.24	+1.3
1,171,220	+		RPSI07_RS13290	0.24	-0.3
1,171,221	-		RPSI07_RS13290	0.24	+0.1
1,171,247	+		RPSI07_RS13290	0.26	-0.9
1,171,248	-		RPSI07_RS13290	0.26	-0.5
1,171,248	-		RPSI07_RS13290	0.26	-0.7
1,171,248	-		RPSI07_RS13290	0.26	+0.4