Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS11920

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS11915 and RPSI07_RS11920 overlap by 4 nucleotidesRPSI07_RS11920 and RPSI07_RS11925 overlap by 8 nucleotides RPSI07_RS11915: RPSI07_RS11915 - histidine ammonia-lyase, at 881,685 to 883,241 _RS11915 RPSI07_RS11920: RPSI07_RS11920 - formimidoylglutamase, at 883,238 to 884,221 _RS11920 RPSI07_RS11925: RPSI07_RS11925 - imidazolonepropionase, at 884,214 to 885,440 _RS11925 Position (kb) 883 884 885Strain fitness (log2 ratio) -1 0 1 2 3at 883.004 kb on + strand, within RPSI07_RS11915at 883.074 kb on - strand, within RPSI07_RS11915at 883.125 kb on + strandat 883.125 kb on + strandat 883.126 kb on - strandat 883.128 kb on + strandat 883.129 kb on - strandat 883.129 kb on - strandat 883.130 kb on - strandat 883.967 kb on + strand, within RPSI07_RS11920at 883.967 kb on + strand, within RPSI07_RS11920at 883.967 kb on + strand, within RPSI07_RS11920at 883.967 kb on + strand, within RPSI07_RS11920at 884.448 kb on + strand, within RPSI07_RS11925at 884.448 kb on + strand, within RPSI07_RS11925at 884.449 kb on - strand, within RPSI07_RS11925at 884.500 kb on - strand, within RPSI07_RS11925at 884.508 kb on - strand, within RPSI07_RS11925at 884.565 kb on + strand, within RPSI07_RS11925at 884.787 kb on + strand, within RPSI07_RS11925at 884.787 kb on + strand, within RPSI07_RS11925at 884.787 kb on + strand, within RPSI07_RS11925at 884.788 kb on - strand, within RPSI07_RS11925at 884.788 kb on - strand, within RPSI07_RS11925at 884.991 kb on + strand, within RPSI07_RS11925at 885.093 kb on + strand, within RPSI07_RS11925at 885.093 kb on + strand, within RPSI07_RS11925at 885.093 kb on + strand, within RPSI07_RS11925at 885.095 kb on - strand, within RPSI07_RS11925

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
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883,004 + RPSI07_RS11915 0.85 -1.0
883,074 - RPSI07_RS11915 0.89 +0.6
883,125 + -0.0
883,125 + +0.5
883,126 - +0.9
883,128 + +2.2
883,129 - +1.0
883,129 - -0.3
883,130 - +0.3
883,967 + RPSI07_RS11920 0.74 -1.0
883,967 + RPSI07_RS11920 0.74 -0.7
883,967 + RPSI07_RS11920 0.74 -1.0
883,967 + RPSI07_RS11920 0.74 +2.3
884,448 + RPSI07_RS11925 0.19 +2.0
884,448 + RPSI07_RS11925 0.19 +0.6
884,449 - RPSI07_RS11925 0.19 -1.0
884,500 - RPSI07_RS11925 0.23 -0.6
884,508 - RPSI07_RS11925 0.24 +2.9
884,565 + RPSI07_RS11925 0.29 +2.3
884,787 + RPSI07_RS11925 0.47 -0.4
884,787 + RPSI07_RS11925 0.47 -0.3
884,787 + RPSI07_RS11925 0.47 -0.7
884,788 - RPSI07_RS11925 0.47 +1.6
884,788 - RPSI07_RS11925 0.47 -1.3
884,991 + RPSI07_RS11925 0.63 -0.9
885,093 + RPSI07_RS11925 0.72 +0.2
885,093 + RPSI07_RS11925 0.72 -0.0
885,093 + RPSI07_RS11925 0.72 +2.0
885,095 - RPSI07_RS11925 0.72 +0.6

Or see this region's nucleotide sequence