Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS09475

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS09470 and RPSI07_RS09475 are separated by 8 nucleotidesRPSI07_RS09475 and RPSI07_RS09480 are separated by 26 nucleotides RPSI07_RS09470: RPSI07_RS09470 - ethanolamine ammonia-lyase subunit EutB, at 349,169 to 350,563 _RS09470 RPSI07_RS09475: RPSI07_RS09475 - ethanolamine ammonia-lyase subunit EutC, at 350,572 to 351,384 _RS09475 RPSI07_RS09480: RPSI07_RS09480 - exodeoxyribonuclease I, at 351,411 to 352,880 _RS09480 Position (kb) 350 351 352Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 349.718 kb on + strand, within RPSI07_RS09470at 349.718 kb on + strand, within RPSI07_RS09470at 349.718 kb on + strand, within RPSI07_RS09470at 349.718 kb on + strand, within RPSI07_RS09470at 349.718 kb on + strand, within RPSI07_RS09470at 349.719 kb on - strand, within RPSI07_RS09470at 349.719 kb on - strand, within RPSI07_RS09470at 349.719 kb on - strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.027 kb on + strand, within RPSI07_RS09470at 350.028 kb on - strand, within RPSI07_RS09470at 350.028 kb on - strand, within RPSI07_RS09470at 350.028 kb on - strand, within RPSI07_RS09470at 350.028 kb on - strand, within RPSI07_RS09470at 350.028 kb on - strand, within RPSI07_RS09470at 350.108 kb on + strand, within RPSI07_RS09470at 350.109 kb on - strand, within RPSI07_RS09470at 350.109 kb on - strand, within RPSI07_RS09470at 350.174 kb on + strand, within RPSI07_RS09470at 350.175 kb on - strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.180 kb on + strand, within RPSI07_RS09470at 350.181 kb on - strand, within RPSI07_RS09470at 350.181 kb on - strand, within RPSI07_RS09470at 350.181 kb on - strand, within RPSI07_RS09470at 350.267 kb on + strand, within RPSI07_RS09470at 350.267 kb on + strand, within RPSI07_RS09470at 350.267 kb on + strand, within RPSI07_RS09470at 350.268 kb on - strand, within RPSI07_RS09470at 350.268 kb on - strand, within RPSI07_RS09470at 350.268 kb on - strand, within RPSI07_RS09470at 350.268 kb on - strand, within RPSI07_RS09470at 350.268 kb on - strand, within RPSI07_RS09470at 350.305 kb on + strand, within RPSI07_RS09470at 350.305 kb on + strand, within RPSI07_RS09470at 350.305 kb on + strand, within RPSI07_RS09470at 350.305 kb on + strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.306 kb on - strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.342 kb on + strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.343 kb on - strand, within RPSI07_RS09470at 350.384 kb on + strand, within RPSI07_RS09470at 350.384 kb on + strand, within RPSI07_RS09470at 350.384 kb on + strand, within RPSI07_RS09470at 350.385 kb on - strand, within RPSI07_RS09470at 350.385 kb on - strand, within RPSI07_RS09470at 350.414 kb on + strand, within RPSI07_RS09470at 350.414 kb on + strand, within RPSI07_RS09470at 350.415 kb on - strand, within RPSI07_RS09470at 350.415 kb on - strand, within RPSI07_RS09470at 350.836 kb on + strand, within RPSI07_RS09475at 350.836 kb on + strand, within RPSI07_RS09475at 350.837 kb on - strand, within RPSI07_RS09475at 350.837 kb on - strand, within RPSI07_RS09475at 351.169 kb on + strand, within RPSI07_RS09475at 351.169 kb on + strand, within RPSI07_RS09475at 351.170 kb on - strand, within RPSI07_RS09475at 351.170 kb on - strand, within RPSI07_RS09475at 351.178 kb on + strand, within RPSI07_RS09475at 351.178 kb on + strand, within RPSI07_RS09475at 351.179 kb on - strand, within RPSI07_RS09475at 351.179 kb on - strand, within RPSI07_RS09475at 351.230 kb on + strand, within RPSI07_RS09475at 351.231 kb on - strand, within RPSI07_RS09475at 351.250 kb on + strand, within RPSI07_RS09475at 351.250 kb on + strand, within RPSI07_RS09475at 351.277 kb on + strand, within RPSI07_RS09475at 351.278 kb on - strand, within RPSI07_RS09475at 351.317 kb on + strandat 351.407 kb on + strandat 351.407 kb on + strandat 351.407 kb on + strandat 351.407 kb on + strandat 351.407 kb on + strandat 351.408 kb on - strandat 351.408 kb on - strandat 351.408 kb on - strandat 351.408 kb on - strandat 351.408 kb on - strandat 351.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
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349,718 + RPSI07_RS09470 0.39 -2.3
349,718 + RPSI07_RS09470 0.39 +0.3
349,718 + RPSI07_RS09470 0.39 +0.2
349,718 + RPSI07_RS09470 0.39 +0.9
349,718 + RPSI07_RS09470 0.39 +0.8
349,719 - RPSI07_RS09470 0.39 -0.9
349,719 - RPSI07_RS09470 0.39 -1.0
349,719 - RPSI07_RS09470 0.39 -0.0
350,027 + RPSI07_RS09470 0.62 +0.9
350,027 + RPSI07_RS09470 0.62 -0.9
350,027 + RPSI07_RS09470 0.62 -1.7
350,027 + RPSI07_RS09470 0.62 -2.1
350,027 + RPSI07_RS09470 0.62 -0.2
350,027 + RPSI07_RS09470 0.62 -0.3
350,027 + RPSI07_RS09470 0.62 +1.4
350,027 + RPSI07_RS09470 0.62 -1.2
350,027 + RPSI07_RS09470 0.62 -0.6
350,028 - RPSI07_RS09470 0.62 +2.4
350,028 - RPSI07_RS09470 0.62 -0.9
350,028 - RPSI07_RS09470 0.62 -0.4
350,028 - RPSI07_RS09470 0.62 +2.0
350,028 - RPSI07_RS09470 0.62 -0.7
350,108 + RPSI07_RS09470 0.67 -1.0
350,109 - RPSI07_RS09470 0.67 +0.6
350,109 - RPSI07_RS09470 0.67 -0.3
350,174 + RPSI07_RS09470 0.72 -3.0
350,175 - RPSI07_RS09470 0.72 +0.6
350,180 + RPSI07_RS09470 0.72 -0.8
350,180 + RPSI07_RS09470 0.72 +0.1
350,180 + RPSI07_RS09470 0.72 +1.1
350,180 + RPSI07_RS09470 0.72 +1.1
350,180 + RPSI07_RS09470 0.72 -0.9
350,180 + RPSI07_RS09470 0.72 -0.8
350,180 + RPSI07_RS09470 0.72 +0.3
350,181 - RPSI07_RS09470 0.73 +0.6
350,181 - RPSI07_RS09470 0.73 -0.2
350,181 - RPSI07_RS09470 0.73 -1.8
350,267 + RPSI07_RS09470 0.79 +0.4
350,267 + RPSI07_RS09470 0.79 -0.5
350,267 + RPSI07_RS09470 0.79 -0.0
350,268 - RPSI07_RS09470 0.79 +0.4
350,268 - RPSI07_RS09470 0.79 -1.6
350,268 - RPSI07_RS09470 0.79 +1.5
350,268 - RPSI07_RS09470 0.79 -1.2
350,268 - RPSI07_RS09470 0.79 +0.4
350,305 + RPSI07_RS09470 0.81 +0.8
350,305 + RPSI07_RS09470 0.81 +0.8
350,305 + RPSI07_RS09470 0.81 +0.6
350,305 + RPSI07_RS09470 0.81 +0.1
350,306 - RPSI07_RS09470 0.82 -0.1
350,306 - RPSI07_RS09470 0.82 +0.1
350,306 - RPSI07_RS09470 0.82 -1.3
350,306 - RPSI07_RS09470 0.82 +1.8
350,306 - RPSI07_RS09470 0.82 +1.4
350,306 - RPSI07_RS09470 0.82 +2.6
350,306 - RPSI07_RS09470 0.82 +0.2
350,306 - RPSI07_RS09470 0.82 +2.0
350,306 - RPSI07_RS09470 0.82 +0.5
350,342 + RPSI07_RS09470 0.84 -1.5
350,342 + RPSI07_RS09470 0.84 +4.0
350,342 + RPSI07_RS09470 0.84 -0.8
350,342 + RPSI07_RS09470 0.84 -1.6
350,342 + RPSI07_RS09470 0.84 -1.8
350,342 + RPSI07_RS09470 0.84 -0.0
350,342 + RPSI07_RS09470 0.84 -0.5
350,343 - RPSI07_RS09470 0.84 -0.3
350,343 - RPSI07_RS09470 0.84 -1.0
350,343 - RPSI07_RS09470 0.84 -1.0
350,343 - RPSI07_RS09470 0.84 -0.2
350,343 - RPSI07_RS09470 0.84 +1.4
350,343 - RPSI07_RS09470 0.84 +0.1
350,343 - RPSI07_RS09470 0.84 -0.8
350,343 - RPSI07_RS09470 0.84 -0.3
350,343 - RPSI07_RS09470 0.84 -0.6
350,343 - RPSI07_RS09470 0.84 +0.4
350,343 - RPSI07_RS09470 0.84 -1.3
350,384 + RPSI07_RS09470 0.87 +0.6
350,384 + RPSI07_RS09470 0.87 -0.5
350,384 + RPSI07_RS09470 0.87 +1.1
350,385 - RPSI07_RS09470 0.87 -0.8
350,385 - RPSI07_RS09470 0.87 -0.4
350,414 + RPSI07_RS09470 0.89 +1.0
350,414 + RPSI07_RS09470 0.89 -3.2
350,415 - RPSI07_RS09470 0.89 -0.6
350,415 - RPSI07_RS09470 0.89 -0.6
350,836 + RPSI07_RS09475 0.32 -2.1
350,836 + RPSI07_RS09475 0.32 +0.5
350,837 - RPSI07_RS09475 0.33 -0.6
350,837 - RPSI07_RS09475 0.33 +0.1
351,169 + RPSI07_RS09475 0.73 -0.1
351,169 + RPSI07_RS09475 0.73 -2.1
351,170 - RPSI07_RS09475 0.74 +0.2
351,170 - RPSI07_RS09475 0.74 -0.9
351,178 + RPSI07_RS09475 0.75 -1.7
351,178 + RPSI07_RS09475 0.75 +2.8
351,179 - RPSI07_RS09475 0.75 +0.0
351,179 - RPSI07_RS09475 0.75 -0.7
351,230 + RPSI07_RS09475 0.81 +2.4
351,231 - RPSI07_RS09475 0.81 -0.6
351,250 + RPSI07_RS09475 0.83 +0.1
351,250 + RPSI07_RS09475 0.83 -1.0
351,277 + RPSI07_RS09475 0.87 +0.7
351,278 - RPSI07_RS09475 0.87 +0.7
351,317 + +0.1
351,407 + -1.1
351,407 + +2.1
351,407 + +0.4
351,407 + +0.1
351,407 + +0.6
351,408 - +1.0
351,408 - +0.8
351,408 - -1.7
351,408 - -1.9
351,408 - -0.8
351,408 - +0.9

Or see this region's nucleotide sequence