Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS08640

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS08635 and RPSI07_RS08640 are separated by 229 nucleotidesRPSI07_RS08640 and RPSI07_RS24845 are separated by 345 nucleotidesRPSI07_RS24845 and RPSI07_RS08645 overlap by 4 nucleotides RPSI07_RS08635: RPSI07_RS08635 - oxygen-independent coproporphyrinogen III oxidase, at 175,408 to 176,874 _RS08635 RPSI07_RS08640: RPSI07_RS08640 - 2-hydroxy-3-oxopropionate reductase, at 177,104 to 178,015 _RS08640 RPSI07_RS24845: RPSI07_RS24845 - hypothetical protein, at 178,361 to 178,599 _RS24845 RPSI07_RS08645: RPSI07_RS08645 - hydroxypyruvate isomerase, at 178,596 to 179,378 _RS08645 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 176.113 kb on + strand, within RPSI07_RS08635at 176.113 kb on + strand, within RPSI07_RS08635at 176.113 kb on + strand, within RPSI07_RS08635at 176.113 kb on + strand, within RPSI07_RS08635at 176.113 kb on + strand, within RPSI07_RS08635at 176.114 kb on - strand, within RPSI07_RS08635at 176.114 kb on - strand, within RPSI07_RS08635at 176.114 kb on - strand, within RPSI07_RS08635at 176.114 kb on - strand, within RPSI07_RS08635at 176.197 kb on + strand, within RPSI07_RS08635at 176.203 kb on + strand, within RPSI07_RS08635at 176.203 kb on + strand, within RPSI07_RS08635at 176.203 kb on + strand, within RPSI07_RS08635at 176.203 kb on + strand, within RPSI07_RS08635at 176.204 kb on - strand, within RPSI07_RS08635at 176.204 kb on - strand, within RPSI07_RS08635at 176.204 kb on - strand, within RPSI07_RS08635at 176.323 kb on + strand, within RPSI07_RS08635at 176.329 kb on + strand, within RPSI07_RS08635at 176.329 kb on + strand, within RPSI07_RS08635at 176.329 kb on + strand, within RPSI07_RS08635at 176.329 kb on + strand, within RPSI07_RS08635at 176.329 kb on + strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.330 kb on - strand, within RPSI07_RS08635at 176.416 kb on + strand, within RPSI07_RS08635at 176.416 kb on + strand, within RPSI07_RS08635at 176.416 kb on + strand, within RPSI07_RS08635at 176.417 kb on - strand, within RPSI07_RS08635at 176.485 kb on + strand, within RPSI07_RS08635at 176.485 kb on + strand, within RPSI07_RS08635at 176.485 kb on + strand, within RPSI07_RS08635at 176.485 kb on + strand, within RPSI07_RS08635at 176.485 kb on + strand, within RPSI07_RS08635at 176.486 kb on - strand, within RPSI07_RS08635at 176.486 kb on - strand, within RPSI07_RS08635at 176.515 kb on + strand, within RPSI07_RS08635at 176.515 kb on + strand, within RPSI07_RS08635at 176.515 kb on + strand, within RPSI07_RS08635at 176.515 kb on + strand, within RPSI07_RS08635at 176.516 kb on - strand, within RPSI07_RS08635at 176.516 kb on - strand, within RPSI07_RS08635at 176.518 kb on + strand, within RPSI07_RS08635at 176.518 kb on + strand, within RPSI07_RS08635at 176.518 kb on + strand, within RPSI07_RS08635at 176.880 kb on + strandat 176.880 kb on + strandat 176.881 kb on - strandat 176.979 kb on + strandat 177.642 kb on + strand, within RPSI07_RS08640at 177.643 kb on - strand, within RPSI07_RS08640at 178.104 kb on - strandat 178.104 kb on - strandat 178.104 kb on - strandat 178.104 kb on - strandat 178.104 kb on - strandat 178.491 kb on - strand, within RPSI07_RS24845at 178.500 kb on + strand, within RPSI07_RS24845at 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.657 kb on + strandat 178.658 kb on - strandat 178.715 kb on + strand, within RPSI07_RS08645at 178.717 kb on + strand, within RPSI07_RS08645at 178.717 kb on + strand, within RPSI07_RS08645at 178.718 kb on - strand, within RPSI07_RS08645at 178.718 kb on - strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.840 kb on + strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.841 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.850 kb on - strand, within RPSI07_RS08645at 178.919 kb on - strand, within RPSI07_RS08645at 178.919 kb on - strand, within RPSI07_RS08645

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
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176,113 + RPSI07_RS08635 0.48 +0.0
176,113 + RPSI07_RS08635 0.48 +0.7
176,113 + RPSI07_RS08635 0.48 -0.9
176,113 + RPSI07_RS08635 0.48 -0.8
176,113 + RPSI07_RS08635 0.48 -1.1
176,114 - RPSI07_RS08635 0.48 -1.0
176,114 - RPSI07_RS08635 0.48 -0.1
176,114 - RPSI07_RS08635 0.48 -0.9
176,114 - RPSI07_RS08635 0.48 +0.4
176,197 + RPSI07_RS08635 0.54 -0.2
176,203 + RPSI07_RS08635 0.54 +0.2
176,203 + RPSI07_RS08635 0.54 +0.8
176,203 + RPSI07_RS08635 0.54 -0.7
176,203 + RPSI07_RS08635 0.54 -0.9
176,204 - RPSI07_RS08635 0.54 +0.8
176,204 - RPSI07_RS08635 0.54 -1.2
176,204 - RPSI07_RS08635 0.54 +2.3
176,323 + RPSI07_RS08635 0.62 -0.8
176,329 + RPSI07_RS08635 0.63 -0.6
176,329 + RPSI07_RS08635 0.63 +4.4
176,329 + RPSI07_RS08635 0.63 +0.7
176,329 + RPSI07_RS08635 0.63 -0.2
176,329 + RPSI07_RS08635 0.63 +0.1
176,330 - RPSI07_RS08635 0.63 -0.6
176,330 - RPSI07_RS08635 0.63 -0.2
176,330 - RPSI07_RS08635 0.63 -1.5
176,330 - RPSI07_RS08635 0.63 +1.2
176,330 - RPSI07_RS08635 0.63 +1.0
176,330 - RPSI07_RS08635 0.63 +0.2
176,330 - RPSI07_RS08635 0.63 +1.6
176,330 - RPSI07_RS08635 0.63 +1.2
176,416 + RPSI07_RS08635 0.69 -2.4
176,416 + RPSI07_RS08635 0.69 +0.3
176,416 + RPSI07_RS08635 0.69 -1.4
176,417 - RPSI07_RS08635 0.69 +0.4
176,485 + RPSI07_RS08635 0.73 -2.5
176,485 + RPSI07_RS08635 0.73 -0.7
176,485 + RPSI07_RS08635 0.73 +1.8
176,485 + RPSI07_RS08635 0.73 +2.6
176,485 + RPSI07_RS08635 0.73 -0.1
176,486 - RPSI07_RS08635 0.73 -0.2
176,486 - RPSI07_RS08635 0.73 +0.1
176,515 + RPSI07_RS08635 0.75 -0.0
176,515 + RPSI07_RS08635 0.75 -2.0
176,515 + RPSI07_RS08635 0.75 -1.5
176,515 + RPSI07_RS08635 0.75 -1.1
176,516 - RPSI07_RS08635 0.76 -1.6
176,516 - RPSI07_RS08635 0.76 -1.0
176,518 + RPSI07_RS08635 0.76 -0.9
176,518 + RPSI07_RS08635 0.76 -0.2
176,518 + RPSI07_RS08635 0.76 +0.1
176,880 + +4.5
176,880 + +0.7
176,881 - +0.3
176,979 + +0.0
177,642 + RPSI07_RS08640 0.59 -1.3
177,643 - RPSI07_RS08640 0.59 +2.3
178,104 - -0.2
178,104 - -0.4
178,104 - -1.4
178,104 - -1.1
178,104 - -0.2
178,491 - RPSI07_RS24845 0.54 -0.4
178,500 + RPSI07_RS24845 0.58 -2.1
178,657 + +1.4
178,657 + +0.7
178,657 + -0.2
178,657 + +1.4
178,657 + -0.6
178,657 + -1.7
178,658 - +1.3
178,715 + RPSI07_RS08645 0.15 -0.9
178,717 + RPSI07_RS08645 0.15 -0.3
178,717 + RPSI07_RS08645 0.15 -0.6
178,718 - RPSI07_RS08645 0.16 -1.0
178,718 - RPSI07_RS08645 0.16 -1.3
178,840 + RPSI07_RS08645 0.31 -0.4
178,840 + RPSI07_RS08645 0.31 +1.7
178,840 + RPSI07_RS08645 0.31 -1.9
178,840 + RPSI07_RS08645 0.31 +0.4
178,840 + RPSI07_RS08645 0.31 +1.6
178,840 + RPSI07_RS08645 0.31 -1.2
178,840 + RPSI07_RS08645 0.31 +0.4
178,840 + RPSI07_RS08645 0.31 +0.9
178,840 + RPSI07_RS08645 0.31 -0.6
178,840 + RPSI07_RS08645 0.31 -1.2
178,840 + RPSI07_RS08645 0.31 +5.1
178,841 - RPSI07_RS08645 0.31 +0.8
178,841 - RPSI07_RS08645 0.31 -0.7
178,841 - RPSI07_RS08645 0.31 +3.4
178,841 - RPSI07_RS08645 0.31 -0.2
178,841 - RPSI07_RS08645 0.31 +0.6
178,841 - RPSI07_RS08645 0.31 +2.0
178,841 - RPSI07_RS08645 0.31 -1.0
178,841 - RPSI07_RS08645 0.31 +0.5
178,841 - RPSI07_RS08645 0.31 -0.2
178,850 - RPSI07_RS08645 0.32 -1.0
178,850 - RPSI07_RS08645 0.32 -0.6
178,850 - RPSI07_RS08645 0.32 -1.0
178,919 - RPSI07_RS08645 0.41 +0.3
178,919 - RPSI07_RS08645 0.41 +1.4

Or see this region's nucleotide sequence