Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS07455

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS07450 and RPSI07_RS07455 are separated by 119 nucleotidesRPSI07_RS07455 and RPSI07_RS07460 are separated by 754 nucleotides RPSI07_RS07450: RPSI07_RS07450 - porin, at 1,973,420 to 1,974,547 _RS07450 RPSI07_RS07455: RPSI07_RS07455 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 1,974,667 to 1,975,890 _RS07455 RPSI07_RS07460: RPSI07_RS07460 - AcrB/AcrD/AcrF family protein, at 1,976,645 to 1,979,851 _RS07460 Position (kb) 1974 1975 1976Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1973.676 kb on + strand, within RPSI07_RS07450at 1973.676 kb on + strand, within RPSI07_RS07450at 1973.677 kb on - strand, within RPSI07_RS07450at 1973.694 kb on + strand, within RPSI07_RS07450at 1973.694 kb on + strand, within RPSI07_RS07450at 1973.694 kb on + strand, within RPSI07_RS07450at 1973.695 kb on - strand, within RPSI07_RS07450at 1973.695 kb on - strand, within RPSI07_RS07450at 1973.892 kb on + strand, within RPSI07_RS07450at 1973.892 kb on + strand, within RPSI07_RS07450at 1973.925 kb on + strand, within RPSI07_RS07450at 1973.926 kb on - strand, within RPSI07_RS07450at 1973.926 kb on - strand, within RPSI07_RS07450at 1973.926 kb on - strand, within RPSI07_RS07450at 1974.034 kb on - strand, within RPSI07_RS07450at 1974.072 kb on + strand, within RPSI07_RS07450at 1974.072 kb on + strand, within RPSI07_RS07450at 1974.073 kb on - strand, within RPSI07_RS07450at 1974.073 kb on - strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.108 kb on + strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.109 kb on - strand, within RPSI07_RS07450at 1974.112 kb on + strand, within RPSI07_RS07450at 1974.113 kb on - strand, within RPSI07_RS07450at 1974.133 kb on - strand, within RPSI07_RS07450at 1974.186 kb on + strand, within RPSI07_RS07450at 1974.187 kb on - strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.432 kb on + strand, within RPSI07_RS07450at 1974.433 kb on - strand, within RPSI07_RS07450at 1974.669 kb on - strandat 1974.733 kb on + strandat 1974.733 kb on + strandat 1974.872 kb on + strand, within RPSI07_RS07455at 1974.872 kb on + strand, within RPSI07_RS07455at 1974.890 kb on + strand, within RPSI07_RS07455at 1974.891 kb on - strand, within RPSI07_RS07455at 1974.891 kb on - strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.004 kb on + strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.005 kb on - strand, within RPSI07_RS07455at 1975.169 kb on + strand, within RPSI07_RS07455at 1975.169 kb on + strand, within RPSI07_RS07455at 1975.169 kb on + strand, within RPSI07_RS07455at 1975.169 kb on + strand, within RPSI07_RS07455at 1975.169 kb on + strand, within RPSI07_RS07455at 1975.170 kb on - strand, within RPSI07_RS07455at 1975.170 kb on - strand, within RPSI07_RS07455at 1975.170 kb on - strand, within RPSI07_RS07455at 1975.170 kb on - strand, within RPSI07_RS07455at 1975.170 kb on - strand, within RPSI07_RS07455at 1975.170 kb on - strand, within RPSI07_RS07455at 1975.193 kb on + strand, within RPSI07_RS07455at 1975.193 kb on + strand, within RPSI07_RS07455at 1975.193 kb on + strand, within RPSI07_RS07455at 1975.194 kb on - strand, within RPSI07_RS07455at 1975.194 kb on - strand, within RPSI07_RS07455at 1975.367 kb on + strand, within RPSI07_RS07455at 1975.367 kb on + strand, within RPSI07_RS07455at 1975.367 kb on + strand, within RPSI07_RS07455at 1975.368 kb on - strand, within RPSI07_RS07455at 1975.368 kb on - strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.451 kb on + strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.452 kb on - strand, within RPSI07_RS07455at 1975.879 kb on - strandat 1976.520 kb on + strandat 1976.529 kb on + strandat 1976.530 kb on - strandat 1976.530 kb on - strandat 1976.530 kb on - strandat 1976.532 kb on + strandat 1976.532 kb on + strandat 1976.576 kb on + strandat 1976.576 kb on + strandat 1976.577 kb on - strandat 1976.577 kb on - strandat 1976.795 kb on + strandat 1976.795 kb on + strandat 1976.795 kb on + strandat 1976.795 kb on + strandat 1976.796 kb on - strandat 1976.796 kb on - strandat 1976.796 kb on - strandat 1976.796 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
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1,973,676 + RPSI07_RS07450 0.23 +0.6
1,973,676 + RPSI07_RS07450 0.23 +2.1
1,973,677 - RPSI07_RS07450 0.23 -1.1
1,973,694 + RPSI07_RS07450 0.24 -0.5
1,973,694 + RPSI07_RS07450 0.24 -1.7
1,973,694 + RPSI07_RS07450 0.24 +0.5
1,973,695 - RPSI07_RS07450 0.24 +1.3
1,973,695 - RPSI07_RS07450 0.24 +1.3
1,973,892 + RPSI07_RS07450 0.42 -1.2
1,973,892 + RPSI07_RS07450 0.42 -0.5
1,973,925 + RPSI07_RS07450 0.45 +2.3
1,973,926 - RPSI07_RS07450 0.45 +0.7
1,973,926 - RPSI07_RS07450 0.45 +1.7
1,973,926 - RPSI07_RS07450 0.45 +0.3
1,974,034 - RPSI07_RS07450 0.54 +0.8
1,974,072 + RPSI07_RS07450 0.58 -0.5
1,974,072 + RPSI07_RS07450 0.58 -1.0
1,974,073 - RPSI07_RS07450 0.58 -3.1
1,974,073 - RPSI07_RS07450 0.58 +0.5
1,974,108 + RPSI07_RS07450 0.61 -0.7
1,974,108 + RPSI07_RS07450 0.61 +2.1
1,974,108 + RPSI07_RS07450 0.61 -0.2
1,974,108 + RPSI07_RS07450 0.61 -1.3
1,974,108 + RPSI07_RS07450 0.61 -1.6
1,974,108 + RPSI07_RS07450 0.61 -3.8
1,974,108 + RPSI07_RS07450 0.61 +0.6
1,974,108 + RPSI07_RS07450 0.61 +0.8
1,974,108 + RPSI07_RS07450 0.61 -1.0
1,974,109 - RPSI07_RS07450 0.61 -0.7
1,974,109 - RPSI07_RS07450 0.61 +1.0
1,974,109 - RPSI07_RS07450 0.61 +0.3
1,974,109 - RPSI07_RS07450 0.61 +0.7
1,974,109 - RPSI07_RS07450 0.61 -0.7
1,974,109 - RPSI07_RS07450 0.61 -0.3
1,974,109 - RPSI07_RS07450 0.61 -0.0
1,974,109 - RPSI07_RS07450 0.61 -0.4
1,974,109 - RPSI07_RS07450 0.61 -1.8
1,974,109 - RPSI07_RS07450 0.61 -0.4
1,974,109 - RPSI07_RS07450 0.61 -1.1
1,974,109 - RPSI07_RS07450 0.61 +0.6
1,974,109 - RPSI07_RS07450 0.61 +1.1
1,974,109 - RPSI07_RS07450 0.61 +0.2
1,974,109 - RPSI07_RS07450 0.61 -1.3
1,974,109 - RPSI07_RS07450 0.61 -0.7
1,974,109 - RPSI07_RS07450 0.61 +1.6
1,974,112 + RPSI07_RS07450 0.61 -0.4
1,974,113 - RPSI07_RS07450 0.61 -1.1
1,974,133 - RPSI07_RS07450 0.63 +0.7
1,974,186 + RPSI07_RS07450 0.68 -0.3
1,974,187 - RPSI07_RS07450 0.68 -0.4
1,974,432 + RPSI07_RS07450 0.90 -0.7
1,974,432 + RPSI07_RS07450 0.90 +0.0
1,974,432 + RPSI07_RS07450 0.90 -0.1
1,974,432 + RPSI07_RS07450 0.90 -0.2
1,974,432 + RPSI07_RS07450 0.90 +0.0
1,974,432 + RPSI07_RS07450 0.90 -0.2
1,974,432 + RPSI07_RS07450 0.90 +1.3
1,974,432 + RPSI07_RS07450 0.90 +0.6
1,974,432 + RPSI07_RS07450 0.90 +0.1
1,974,433 - RPSI07_RS07450 0.90 +0.7
1,974,669 - +0.6
1,974,733 + -0.7
1,974,733 + -0.6
1,974,872 + RPSI07_RS07455 0.17 -0.7
1,974,872 + RPSI07_RS07455 0.17 -0.0
1,974,890 + RPSI07_RS07455 0.18 +0.0
1,974,891 - RPSI07_RS07455 0.18 -1.2
1,974,891 - RPSI07_RS07455 0.18 -0.4
1,975,004 + RPSI07_RS07455 0.28 +0.4
1,975,004 + RPSI07_RS07455 0.28 -0.3
1,975,004 + RPSI07_RS07455 0.28 +0.3
1,975,004 + RPSI07_RS07455 0.28 -1.4
1,975,004 + RPSI07_RS07455 0.28 -0.4
1,975,004 + RPSI07_RS07455 0.28 -0.7
1,975,004 + RPSI07_RS07455 0.28 +1.3
1,975,004 + RPSI07_RS07455 0.28 -0.3
1,975,004 + RPSI07_RS07455 0.28 +0.8
1,975,004 + RPSI07_RS07455 0.28 -1.2
1,975,005 - RPSI07_RS07455 0.28 +0.8
1,975,005 - RPSI07_RS07455 0.28 +0.7
1,975,005 - RPSI07_RS07455 0.28 +0.3
1,975,005 - RPSI07_RS07455 0.28 +0.7
1,975,005 - RPSI07_RS07455 0.28 +2.5
1,975,005 - RPSI07_RS07455 0.28 -0.6
1,975,005 - RPSI07_RS07455 0.28 +0.7
1,975,005 - RPSI07_RS07455 0.28 -0.9
1,975,169 + RPSI07_RS07455 0.41 -0.3
1,975,169 + RPSI07_RS07455 0.41 -2.7
1,975,169 + RPSI07_RS07455 0.41 +0.9
1,975,169 + RPSI07_RS07455 0.41 -1.6
1,975,169 + RPSI07_RS07455 0.41 -0.7
1,975,170 - RPSI07_RS07455 0.41 -1.3
1,975,170 - RPSI07_RS07455 0.41 -0.1
1,975,170 - RPSI07_RS07455 0.41 +0.5
1,975,170 - RPSI07_RS07455 0.41 -0.9
1,975,170 - RPSI07_RS07455 0.41 -0.9
1,975,170 - RPSI07_RS07455 0.41 -2.1
1,975,193 + RPSI07_RS07455 0.43 -0.0
1,975,193 + RPSI07_RS07455 0.43 -0.1
1,975,193 + RPSI07_RS07455 0.43 +1.0
1,975,194 - RPSI07_RS07455 0.43 -0.7
1,975,194 - RPSI07_RS07455 0.43 +1.0
1,975,367 + RPSI07_RS07455 0.57 -0.7
1,975,367 + RPSI07_RS07455 0.57 -0.2
1,975,367 + RPSI07_RS07455 0.57 +1.5
1,975,368 - RPSI07_RS07455 0.57 +1.0
1,975,368 - RPSI07_RS07455 0.57 -0.0
1,975,451 + RPSI07_RS07455 0.64 +0.7
1,975,451 + RPSI07_RS07455 0.64 +2.0
1,975,451 + RPSI07_RS07455 0.64 +0.3
1,975,451 + RPSI07_RS07455 0.64 -2.2
1,975,451 + RPSI07_RS07455 0.64 +0.7
1,975,451 + RPSI07_RS07455 0.64 +0.2
1,975,451 + RPSI07_RS07455 0.64 -1.8
1,975,451 + RPSI07_RS07455 0.64 +0.1
1,975,451 + RPSI07_RS07455 0.64 -2.1
1,975,452 - RPSI07_RS07455 0.64 +0.1
1,975,452 - RPSI07_RS07455 0.64 -0.5
1,975,452 - RPSI07_RS07455 0.64 -0.5
1,975,452 - RPSI07_RS07455 0.64 +0.5
1,975,452 - RPSI07_RS07455 0.64 -0.3
1,975,452 - RPSI07_RS07455 0.64 +1.1
1,975,452 - RPSI07_RS07455 0.64 -0.3
1,975,879 - -0.9
1,976,520 + +1.5
1,976,529 + +0.1
1,976,530 - -0.1
1,976,530 - +0.1
1,976,530 - -0.4
1,976,532 + -0.2
1,976,532 + +1.2
1,976,576 + -0.3
1,976,576 + -0.1
1,976,577 - +0.3
1,976,577 - -0.0
1,976,795 + -0.1
1,976,795 + -0.4
1,976,795 + +0.3
1,976,795 + +3.6
1,976,796 - -0.5
1,976,796 - -0.0
1,976,796 - -0.4
1,976,796 - -0.3

Or see this region's nucleotide sequence