Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS07440

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS07435 and RPSI07_RS07440 are separated by 67 nucleotidesRPSI07_RS07440 and RPSI07_RS07445 are separated by 463 nucleotides RPSI07_RS07435: RPSI07_RS07435 - aldehyde dehydrogenase family protein, at 1,969,269 to 1,970,783 _RS07435 RPSI07_RS07440: RPSI07_RS07440 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,970,851 to 1,971,993 _RS07440 RPSI07_RS07445: RPSI07_RS07445 - LysR family transcriptional regulator, at 1,972,457 to 1,973,347 _RS07445 Position (kb) 1970 1971 1972Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1970.098 kb on - strand, within RPSI07_RS07435at 1970.098 kb on - strand, within RPSI07_RS07435at 1970.328 kb on + strand, within RPSI07_RS07435at 1970.422 kb on + strand, within RPSI07_RS07435at 1970.423 kb on - strand, within RPSI07_RS07435at 1970.752 kb on + strandat 1970.753 kb on - strandat 1970.848 kb on + strandat 1970.849 kb on - strandat 1970.888 kb on + strandat 1970.888 kb on + strandat 1970.889 kb on - strandat 1970.901 kb on + strandat 1970.902 kb on - strandat 1970.963 kb on + strandat 1970.964 kb on - strandat 1970.990 kb on + strand, within RPSI07_RS07440at 1971.054 kb on - strand, within RPSI07_RS07440at 1971.059 kb on + strand, within RPSI07_RS07440at 1971.059 kb on + strand, within RPSI07_RS07440at 1971.060 kb on - strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.068 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.101 kb on + strand, within RPSI07_RS07440at 1971.102 kb on - strand, within RPSI07_RS07440at 1971.102 kb on - strand, within RPSI07_RS07440at 1971.165 kb on - strand, within RPSI07_RS07440at 1971.165 kb on - strand, within RPSI07_RS07440at 1971.165 kb on - strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.305 kb on + strand, within RPSI07_RS07440at 1971.306 kb on - strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.632 kb on + strand, within RPSI07_RS07440at 1971.633 kb on - strand, within RPSI07_RS07440at 1971.633 kb on - strand, within RPSI07_RS07440at 1971.667 kb on + strand, within RPSI07_RS07440at 1971.804 kb on + strand, within RPSI07_RS07440at 1971.804 kb on + strand, within RPSI07_RS07440at 1971.804 kb on + strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1971.805 kb on - strand, within RPSI07_RS07440at 1972.235 kb on + strandat 1972.236 kb on - strandat 1972.237 kb on + strandat 1972.237 kb on + strandat 1972.237 kb on + strandat 1972.237 kb on + strandat 1972.238 kb on - strandat 1972.296 kb on + strandat 1972.296 kb on + strandat 1972.296 kb on + strandat 1972.296 kb on + strandat 1972.297 kb on - strandat 1972.297 kb on - strandat 1972.368 kb on + strandat 1972.368 kb on + strandat 1972.369 kb on - strandat 1972.396 kb on + strandat 1972.397 kb on - strandat 1972.397 kb on - strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.470 kb on + strandat 1972.471 kb on - strandat 1972.471 kb on - strandat 1972.471 kb on - strandat 1972.661 kb on + strand, within RPSI07_RS07445at 1972.661 kb on + strand, within RPSI07_RS07445at 1972.661 kb on + strand, within RPSI07_RS07445at 1972.661 kb on + strand, within RPSI07_RS07445at 1972.661 kb on + strand, within RPSI07_RS07445at 1972.662 kb on - strand, within RPSI07_RS07445at 1972.662 kb on - strand, within RPSI07_RS07445at 1972.739 kb on + strand, within RPSI07_RS07445at 1972.739 kb on + strand, within RPSI07_RS07445at 1972.739 kb on + strand, within RPSI07_RS07445at 1972.740 kb on - strand, within RPSI07_RS07445at 1972.740 kb on - strand, within RPSI07_RS07445at 1972.740 kb on - strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.880 kb on + strand, within RPSI07_RS07445at 1972.881 kb on - strand, within RPSI07_RS07445at 1972.881 kb on - strand, within RPSI07_RS07445at 1972.881 kb on - strand, within RPSI07_RS07445at 1972.881 kb on - strand, within RPSI07_RS07445at 1972.881 kb on - strand, within RPSI07_RS07445at 1972.895 kb on + strand, within RPSI07_RS07445at 1972.895 kb on + strand, within RPSI07_RS07445at 1972.895 kb on + strand, within RPSI07_RS07445at 1972.895 kb on + strand, within RPSI07_RS07445at 1972.896 kb on - strand, within RPSI07_RS07445at 1972.896 kb on - strand, within RPSI07_RS07445at 1972.896 kb on - strand, within RPSI07_RS07445at 1972.979 kb on + strand, within RPSI07_RS07445at 1972.980 kb on - strand, within RPSI07_RS07445

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
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1,970,098 - RPSI07_RS07435 0.55 +2.0
1,970,098 - RPSI07_RS07435 0.55 -0.1
1,970,328 + RPSI07_RS07435 0.70 +0.3
1,970,422 + RPSI07_RS07435 0.76 +0.9
1,970,423 - RPSI07_RS07435 0.76 +1.7
1,970,752 + -0.1
1,970,753 - +0.5
1,970,848 + +2.0
1,970,849 - +0.6
1,970,888 + -2.2
1,970,888 + +0.4
1,970,889 - +0.1
1,970,901 + +0.4
1,970,902 - +0.0
1,970,963 + +0.5
1,970,964 - -1.1
1,970,990 + RPSI07_RS07440 0.12 -1.1
1,971,054 - RPSI07_RS07440 0.18 -0.3
1,971,059 + RPSI07_RS07440 0.18 +0.1
1,971,059 + RPSI07_RS07440 0.18 +0.2
1,971,060 - RPSI07_RS07440 0.18 -0.4
1,971,068 + RPSI07_RS07440 0.19 -0.2
1,971,068 + RPSI07_RS07440 0.19 -1.5
1,971,068 + RPSI07_RS07440 0.19 -2.7
1,971,068 + RPSI07_RS07440 0.19 +0.4
1,971,068 + RPSI07_RS07440 0.19 -2.7
1,971,101 + RPSI07_RS07440 0.22 +0.6
1,971,101 + RPSI07_RS07440 0.22 -1.1
1,971,101 + RPSI07_RS07440 0.22 +0.7
1,971,101 + RPSI07_RS07440 0.22 +1.3
1,971,102 - RPSI07_RS07440 0.22 +0.3
1,971,102 - RPSI07_RS07440 0.22 -0.7
1,971,165 - RPSI07_RS07440 0.27 -0.2
1,971,165 - RPSI07_RS07440 0.27 +0.7
1,971,165 - RPSI07_RS07440 0.27 -1.3
1,971,305 + RPSI07_RS07440 0.40 -1.3
1,971,305 + RPSI07_RS07440 0.40 -0.8
1,971,305 + RPSI07_RS07440 0.40 -0.7
1,971,305 + RPSI07_RS07440 0.40 -0.3
1,971,306 - RPSI07_RS07440 0.40 -0.6
1,971,632 + RPSI07_RS07440 0.68 +0.6
1,971,632 + RPSI07_RS07440 0.68 -2.1
1,971,632 + RPSI07_RS07440 0.68 +1.6
1,971,632 + RPSI07_RS07440 0.68 +0.4
1,971,632 + RPSI07_RS07440 0.68 -1.3
1,971,632 + RPSI07_RS07440 0.68 -0.5
1,971,632 + RPSI07_RS07440 0.68 +0.0
1,971,632 + RPSI07_RS07440 0.68 +0.4
1,971,633 - RPSI07_RS07440 0.68 +2.5
1,971,633 - RPSI07_RS07440 0.68 +0.5
1,971,667 + RPSI07_RS07440 0.71 -1.0
1,971,804 + RPSI07_RS07440 0.83 -0.5
1,971,804 + RPSI07_RS07440 0.83 +0.1
1,971,804 + RPSI07_RS07440 0.83 -1.3
1,971,805 - RPSI07_RS07440 0.83 -1.3
1,971,805 - RPSI07_RS07440 0.83 -0.9
1,971,805 - RPSI07_RS07440 0.83 +0.9
1,971,805 - RPSI07_RS07440 0.83 -0.4
1,971,805 - RPSI07_RS07440 0.83 +2.9
1,971,805 - RPSI07_RS07440 0.83 -1.8
1,971,805 - RPSI07_RS07440 0.83 -0.5
1,971,805 - RPSI07_RS07440 0.83 -0.4
1,972,235 + -2.3
1,972,236 - -1.1
1,972,237 + -0.9
1,972,237 + +0.7
1,972,237 + +0.1
1,972,237 + -0.7
1,972,238 - -0.8
1,972,296 + -0.5
1,972,296 + +0.0
1,972,296 + -1.2
1,972,296 + -0.7
1,972,297 - +0.5
1,972,297 - +2.8
1,972,368 + +0.2
1,972,368 + +2.8
1,972,369 - -1.4
1,972,396 + +0.3
1,972,397 - -0.7
1,972,397 - -2.7
1,972,470 + -0.2
1,972,470 + -1.2
1,972,470 + +0.9
1,972,470 + +1.1
1,972,470 + +0.1
1,972,470 + +1.3
1,972,470 + +0.4
1,972,470 + -0.4
1,972,471 - -0.8
1,972,471 - -0.3
1,972,471 - +0.3
1,972,661 + RPSI07_RS07445 0.23 -1.7
1,972,661 + RPSI07_RS07445 0.23 -1.2
1,972,661 + RPSI07_RS07445 0.23 +0.1
1,972,661 + RPSI07_RS07445 0.23 -1.1
1,972,661 + RPSI07_RS07445 0.23 +1.3
1,972,662 - RPSI07_RS07445 0.23 +1.2
1,972,662 - RPSI07_RS07445 0.23 +0.6
1,972,739 + RPSI07_RS07445 0.32 +0.6
1,972,739 + RPSI07_RS07445 0.32 +0.5
1,972,739 + RPSI07_RS07445 0.32 -0.2
1,972,740 - RPSI07_RS07445 0.32 -0.7
1,972,740 - RPSI07_RS07445 0.32 -0.1
1,972,740 - RPSI07_RS07445 0.32 +1.0
1,972,880 + RPSI07_RS07445 0.47 +0.9
1,972,880 + RPSI07_RS07445 0.47 +0.0
1,972,880 + RPSI07_RS07445 0.47 +2.8
1,972,880 + RPSI07_RS07445 0.47 -0.9
1,972,880 + RPSI07_RS07445 0.47 -0.2
1,972,880 + RPSI07_RS07445 0.47 +0.3
1,972,880 + RPSI07_RS07445 0.47 -0.0
1,972,881 - RPSI07_RS07445 0.48 +0.7
1,972,881 - RPSI07_RS07445 0.48 -1.6
1,972,881 - RPSI07_RS07445 0.48 -0.7
1,972,881 - RPSI07_RS07445 0.48 -0.8
1,972,881 - RPSI07_RS07445 0.48 +0.5
1,972,895 + RPSI07_RS07445 0.49 -0.2
1,972,895 + RPSI07_RS07445 0.49 +0.5
1,972,895 + RPSI07_RS07445 0.49 -1.9
1,972,895 + RPSI07_RS07445 0.49 +1.4
1,972,896 - RPSI07_RS07445 0.49 -0.4
1,972,896 - RPSI07_RS07445 0.49 +0.1
1,972,896 - RPSI07_RS07445 0.49 +2.3
1,972,979 + RPSI07_RS07445 0.59 +3.6
1,972,980 - RPSI07_RS07445 0.59 +0.5

Or see this region's nucleotide sequence