Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06570

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
1,764,905	-		RPSI07_RS06560	0.63	-1.2
1,764,905	-		RPSI07_RS06560	0.63	-0.1
1,765,122	+				+0.3
1,765,123	-				-0.7
1,765,135	+				-0.6
1,765,135	+				+1.6
1,765,135	+				+1.1
1,765,135	+				+0.1
1,765,135	+				+0.3
1,765,135	+				-0.7
1,765,135	+				+0.1
1,765,135	+				-1.0
1,765,135	+				-1.7
1,765,135	+				+2.8
1,765,135	+				+0.3
1,765,135	+				-1.0
1,765,136	-				+0.1
1,765,136	-				-0.5
1,765,136	-				+1.3
1,765,206	-		RPSI07_RS06565	0.20	+0.0
1,765,206	-		RPSI07_RS06565	0.20	-1.3
1,765,215	+		RPSI07_RS06565	0.21	+1.9
1,765,216	-		RPSI07_RS06565	0.21	-1.4
1,765,216	-		RPSI07_RS06565	0.21	+0.3
1,765,216	-		RPSI07_RS06565	0.21	-1.3
1,765,216	-		RPSI07_RS06565	0.21	+0.6
1,765,439	+		RPSI07_RS06565	0.57	+0.0
1,765,439	+		RPSI07_RS06565	0.57	-0.6
1,765,439	+		RPSI07_RS06565	0.57	-2.0
1,765,440	-		RPSI07_RS06565	0.57	+0.4
1,765,514	+		RPSI07_RS06565	0.68	-1.5
1,765,514	+		RPSI07_RS06565	0.68	-0.1
1,765,515	-		RPSI07_RS06565	0.69	+0.3
1,765,515	-		RPSI07_RS06565	0.69	+0.3
1,765,515	-		RPSI07_RS06565	0.69	+0.1
1,765,515	-		RPSI07_RS06565	0.69	+0.1
1,765,515	-		RPSI07_RS06565	0.69	-0.5
1,765,515	-		RPSI07_RS06565	0.69	+0.1
1,765,515	-		RPSI07_RS06565	0.69	+0.6
1,765,515	-		RPSI07_RS06565	0.69	+1.2
1,765,515	-		RPSI07_RS06565	0.69	-0.3
1,765,515	-		RPSI07_RS06565	0.69	-0.4
1,765,515	-		RPSI07_RS06565	0.69	+2.9
1,765,515	-		RPSI07_RS06565	0.69	-0.1
1,765,515	-		RPSI07_RS06565	0.69	-1.9
1,765,603	+		RPSI07_RS06565	0.82	+1.3
1,765,603	+		RPSI07_RS06565	0.82	+3.1
1,765,603	+		RPSI07_RS06565	0.82	-0.1
1,765,603	+		RPSI07_RS06565	0.82	-0.0
1,765,603	+		RPSI07_RS06565	0.82	-0.6
1,765,603	+		RPSI07_RS06565	0.82	-0.8
1,765,603	+		RPSI07_RS06565	0.82	+2.3
1,765,603	+		RPSI07_RS06565	0.82	+1.9
1,765,604	-		RPSI07_RS06565	0.83	-0.0
1,765,604	-		RPSI07_RS06565	0.83	-1.0
1,765,604	-		RPSI07_RS06565	0.83	-0.1
1,765,604	-		RPSI07_RS06565	0.83	-0.5
1,765,604	-		RPSI07_RS06565	0.83	-1.0
1,765,604	-		RPSI07_RS06565	0.83	-0.6
1,765,604	-		RPSI07_RS06565	0.83	+1.1
1,765,604	-		RPSI07_RS06565	0.83	-1.6
1,765,639	+				+1.3
1,765,639	+		RPSI07_RS06565	0.88	+0.9
1,765,639	+		RPSI07_RS06565	0.88	-0.6
1,765,640	-		RPSI07_RS06565	0.88	-0.8
1,765,640	-		RPSI07_RS06565	0.88	+0.1
1,765,640	-		RPSI07_RS06565	0.88	-1.3
1,765,640	-		RPSI07_RS06565	0.88	-0.5
1,765,642	+		RPSI07_RS06565	0.89	-0.7
1,765,643	-		RPSI07_RS06565	0.89	-1.0
1,765,774	+				+0.1
1,765,827	+				-1.3
1,765,827	+				-0.2
1,765,827	+				-0.5
1,765,828	-				-2.9
1,765,828	-				-0.3
1,765,828	-				-1.5
1,765,875	+				-2.4
1,765,875	+				-0.6
1,765,889	+				-0.2
1,765,889	+				+1.5
1,765,889	+				-0.9
1,765,889	+				+0.1
1,765,890	-				-1.4
1,765,895	+				-0.0
1,765,895	+				+0.0
1,765,895	+				-2.2
1,765,895	+				-1.9
1,765,895	+				-2.1
1,765,895	+				+0.5
1,765,895	+				+1.5
1,765,895	+				-0.6
1,765,895	+				-0.8
1,765,895	+				+0.9
1,765,895	+				+1.1
1,765,895	+				+0.1
1,765,896	-				+0.3
1,765,896	-				-1.2
1,765,896	-				-0.2
1,765,896	-				+1.3
1,765,896	-				+0.7
1,765,896	-				-0.4
1,765,896	-				+0.3
1,765,896	-				-0.5
1,765,896	-				+0.8
1,765,896	-				+4.1
1,765,896	-				-0.3
1,765,896	-				+0.6
1,765,896	-				-0.6
1,765,896	-				-0.3
1,765,896	-				-0.7
1,765,896	-				-0.5
1,765,915	+				+0.5
1,765,916	-				+0.1
1,765,916	-				+0.3
1,766,022	-		RPSI07_RS06570	0.21	-0.5
1,766,022	-		RPSI07_RS06570	0.21	+1.9
1,766,023	-		RPSI07_RS06570	0.21	+0.1
1,766,027	-		RPSI07_RS06570	0.22	-1.6
1,766,027	-		RPSI07_RS06570	0.22	+1.3
1,766,027	-		RPSI07_RS06570	0.22	-0.4
1,766,033	+		RPSI07_RS06570	0.23	+1.0
1,766,033	+		RPSI07_RS06570	0.23	-2.3
1,766,295	+		RPSI07_RS06570	0.67	-0.1
1,766,295	+		RPSI07_RS06570	0.67	-1.0
1,766,295	+		RPSI07_RS06570	0.67	-0.1
1,766,295	+		RPSI07_RS06570	0.67	+0.5
1,766,295	+		RPSI07_RS06570	0.67	-1.3
1,766,296	-		RPSI07_RS06570	0.67	-1.2
1,766,296	-		RPSI07_RS06570	0.67	-1.8
1,766,296	-		RPSI07_RS06570	0.67	-0.1
1,766,296	-		RPSI07_RS06570	0.67	-0.0
1,766,354	+		RPSI07_RS06570	0.77	+2.3
1,766,354	+		RPSI07_RS06570	0.77	+0.1
1,766,355	-		RPSI07_RS06570	0.77	-1.5
1,766,355	-		RPSI07_RS06570	0.77	+0.8
1,766,355	-		RPSI07_RS06570	0.77	-0.1
1,766,355	-		RPSI07_RS06570	0.77	+0.5
1,766,355	-		RPSI07_RS06570	0.77	+3.4
1,766,417	+		RPSI07_RS06570	0.87	-1.4
1,766,429	+		RPSI07_RS06570	0.89	-0.3
1,766,430	-		RPSI07_RS06570	0.89	-0.4
1,766,430	-		RPSI07_RS06570	0.89	+1.8
1,766,633	+				+0.7
1,766,633	+				-0.1
1,766,633	+				-0.0
1,766,634	-				+1.8
1,766,634	-				-1.0
1,766,634	-				-1.3
1,766,634	-				-0.9
1,766,634	-				-0.4
1,766,634	-				-2.6
1,766,634	-				+1.1
1,766,634	-				-0.7
1,766,639	-				-1.4
1,766,644	+				+0.5
1,766,644	+				-0.1
1,766,645	-				+0.3
1,766,645	-				+0.6
1,766,645	-				+0.8
1,766,645	-				+1.3
1,766,645	-				+0.9
1,766,647	-				-1.8
1,766,702	+				-1.9
1,766,702	+				-0.8
1,766,702	+				-2.3
1,766,702	+				-0.4
1,766,702	+				-0.9
1,766,703	-				-0.7
1,766,703	-				+0.2
1,766,703	-				-0.7
1,766,703	-				+0.4
1,766,926	+		RPSI07_RS24635	0.56	-1.4
1,766,927	-		RPSI07_RS24635	0.57	-0.9
1,766,927	-		RPSI07_RS24635	0.57	-0.1
1,767,013	+		RPSI07_RS24635	0.78	-0.0
1,767,013	+		RPSI07_RS24635	0.78	+0.1
1,767,013	+		RPSI07_RS24635	0.78	-1.1
1,767,054	+				+0.6
1,767,054	+				+1.3
1,767,054	+				+0.0
1,767,055	-				+0.6
1,767,055	-				-0.2
1,767,055	-				-1.9
1,767,089	+				+1.9
1,767,091	-				-1.1
1,767,106	+		RPSI07_RS24640	0.13	-1.2
1,767,107	-		RPSI07_RS24640	0.14	-0.0
1,767,107	-		RPSI07_RS24640	0.14	-1.1
1,767,140	-		RPSI07_RS24640	0.22	+1.1
1,767,140	-		RPSI07_RS24640	0.22	-0.5
1,767,148	-		RPSI07_RS24640	0.24	-0.6
1,767,148	-		RPSI07_RS24640	0.24	-1.1
1,767,148	-		RPSI07_RS24640	0.24	-1.4
1,767,204	-		RPSI07_RS24640	0.38	+0.3
1,767,210	+		RPSI07_RS24640	0.40	-1.4
1,767,210	+		RPSI07_RS24640	0.40	-1.1
1,767,211	-		RPSI07_RS24640	0.40	+0.9
1,767,211	-		RPSI07_RS24640	0.40	-0.1
1,767,211	-		RPSI07_RS24640	0.40	-2.7
1,767,283	+		RPSI07_RS24640	0.59	-1.9
1,767,283	+		RPSI07_RS24640	0.59	-0.8
1,767,283	+		RPSI07_RS24640	0.59	-1.0
1,767,284	-		RPSI07_RS24640	0.59	+0.1
1,767,284	-		RPSI07_RS24640	0.59	-0.4
1,767,376	-		RPSI07_RS24640	0.82	+0.1
1,767,376	-		RPSI07_RS24640	0.82	-0.0
1,767,377	+		RPSI07_RS24640	0.82	-2.8
1,767,377	+		RPSI07_RS24640	0.82	+0.1
1,767,378	-		RPSI07_RS24640	0.83	-0.5
1,767,378	-		RPSI07_RS24640	0.83	+0.1
1,767,378	-		RPSI07_RS24640	0.83	+0.4
1,767,378	-		RPSI07_RS24640	0.83	-0.4
1,767,436	+				-0.3
1,767,437	-				+1.1
1,767,450	+				-1.2
1,767,451	-				-0.1
1,767,490	-				+1.7