Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15395

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
1,616,731	+				-0.8
1,616,731	+				-0.1
1,616,811	+				-0.6
1,617,199	+				-0.4
1,617,199	+				-1.4
1,617,409	+				+3.7
1,617,409	+				-0.5
1,617,410	-				+1.6
1,617,410	-				+1.0
1,617,410	-				-0.5
1,617,415	+				-1.4
1,617,415	+				-0.3
1,617,415	+				-1.8
1,617,415	+				+2.2
1,617,415	+				+1.5
1,617,416	-				-0.7
1,617,416	-				+0.8
1,617,416	-				-0.6
1,617,416	-				-1.1
1,617,416	-				-0.6
1,617,416	-				+0.3
1,617,451	-				+0.3
1,617,573	+				-0.6
1,617,574	-				+0.4
1,617,574	-				-0.4
1,617,716	+				+1.2
1,618,031	+		RPSI07_RS15395	0.16	+0.1
1,618,031	+		RPSI07_RS15395	0.16	-0.8
1,618,074	-		RPSI07_RS15395	0.18	-1.0
1,618,094	+		RPSI07_RS15395	0.19	-1.7
1,618,160	+		RPSI07_RS15395	0.21	-1.2
1,618,160	+		RPSI07_RS15395	0.21	+1.8
1,618,274	+		RPSI07_RS15395	0.25	-0.4
1,618,274	+		RPSI07_RS15395	0.25	+0.5
1,618,275	-		RPSI07_RS15395	0.25	-1.1
1,618,275	-		RPSI07_RS15395	0.25	+2.2
1,618,275	-		RPSI07_RS15395	0.25	-0.5
1,618,520	+		RPSI07_RS15395	0.34	+1.6
1,618,520	+		RPSI07_RS15395	0.34	-0.8
1,618,520	+		RPSI07_RS15395	0.34	+0.9
1,618,520	+		RPSI07_RS15395	0.34	+0.8
1,618,520	+		RPSI07_RS15395	0.34	-0.4
1,618,521	-		RPSI07_RS15395	0.34	-0.6
1,618,521	-		RPSI07_RS15395	0.34	-1.0
1,618,521	-		RPSI07_RS15395	0.34	-0.7
1,618,521	-		RPSI07_RS15395	0.34	-0.8
1,618,521	-		RPSI07_RS15395	0.34	-1.0
1,618,557	-		RPSI07_RS15395	0.35	+1.2
1,618,565	+		RPSI07_RS15395	0.36	-1.2
1,618,565	+		RPSI07_RS15395	0.36	+3.4
1,618,565	+		RPSI07_RS15395	0.36	-0.6
1,618,565	+		RPSI07_RS15395	0.36	+1.4
1,618,565	+		RPSI07_RS15395	0.36	-0.7
1,618,565	+		RPSI07_RS15395	0.36	+0.6
1,618,566	-		RPSI07_RS15395	0.36	-2.3
1,618,566	-		RPSI07_RS15395	0.36	+0.2
1,618,566	-		RPSI07_RS15395	0.36	+2.1
1,618,566	-		RPSI07_RS15395	0.36	+0.2
1,618,592	+		RPSI07_RS15395	0.37	-1.2
1,618,593	-		RPSI07_RS15395	0.37	+1.0
1,618,717	+		RPSI07_RS15395	0.41	-0.1
1,618,717	+		RPSI07_RS15395	0.41	-1.3
1,618,721	+		RPSI07_RS15395	0.41	-1.0
1,618,721	+		RPSI07_RS15395	0.41	+0.8
1,618,721	+		RPSI07_RS15395	0.41	-0.1
1,618,721	+		RPSI07_RS15395	0.41	-0.9
1,618,721	+		RPSI07_RS15395	0.41	-1.0
1,618,721	+		RPSI07_RS15395	0.41	-1.0
1,618,721	+		RPSI07_RS15395	0.41	-1.2
1,618,721	+		RPSI07_RS15395	0.41	-0.7
1,618,721	+		RPSI07_RS15395	0.41	-0.6
1,618,721	+		RPSI07_RS15395	0.41	+2.5
1,618,722	-		RPSI07_RS15395	0.41	+1.0
1,618,722	-		RPSI07_RS15395	0.41	+0.6
1,618,722	-		RPSI07_RS15395	0.41	-1.4
1,618,722	-		RPSI07_RS15395	0.41	-0.2
1,618,722	-		RPSI07_RS15395	0.41	-1.3
1,618,722	-		RPSI07_RS15395	0.41	-0.3
1,618,722	-		RPSI07_RS15395	0.41	-0.8
1,618,748	+		RPSI07_RS15395	0.42	-0.4
1,618,749	-		RPSI07_RS15395	0.42	+0.7
1,618,749	-		RPSI07_RS15395	0.42	+1.2
1,618,749	-		RPSI07_RS15395	0.42	-0.3
1,618,749	-		RPSI07_RS15395	0.42	-1.7
1,618,751	+		RPSI07_RS15395	0.42	-1.2
1,618,751	+		RPSI07_RS15395	0.42	-1.6
1,618,752	-		RPSI07_RS15395	0.43	+0.6
1,618,955	+		RPSI07_RS15395	0.50	-0.4
1,619,015	+		RPSI07_RS15395	0.52	+1.5
1,619,040	-		RPSI07_RS15395	0.53	+0.2
1,619,040	-		RPSI07_RS15395	0.53	-0.4
1,619,040	-		RPSI07_RS15395	0.53	-2.6
1,619,076	-		RPSI07_RS15395	0.54	-0.9
1,619,109	-		RPSI07_RS15395	0.55	+1.2
1,619,109	-		RPSI07_RS15395	0.55	-1.3
1,619,109	-		RPSI07_RS15395	0.55	-0.6
1,619,185	+		RPSI07_RS15395	0.58	-0.4
1,619,185	+		RPSI07_RS15395	0.58	-1.3
1,619,185	+		RPSI07_RS15395	0.58	+1.5
1,619,186	-		RPSI07_RS15395	0.58	-2.0
1,619,186	-		RPSI07_RS15395	0.58	+1.5
1,619,201	+		RPSI07_RS15395	0.59	+1.1
1,619,202	-		RPSI07_RS15395	0.59	-2.3
1,619,202	-		RPSI07_RS15395	0.59	+0.6
1,619,202	-		RPSI07_RS15395	0.59	-0.9
1,619,203	+		RPSI07_RS15395	0.59	-0.2
1,619,204	-		RPSI07_RS15395	0.59	+1.4
1,619,294	+		RPSI07_RS15395	0.62	+2.6
1,619,295	-		RPSI07_RS15395	0.62	-0.5
1,619,295	-		RPSI07_RS15395	0.62	-0.9
1,619,295	-		RPSI07_RS15395	0.62	-0.2
1,619,339	+		RPSI07_RS15395	0.64	-0.7
1,619,339	+		RPSI07_RS15395	0.64	-0.4
1,619,340	-		RPSI07_RS15395	0.64	+1.1
1,619,340	-		RPSI07_RS15395	0.64	-0.2
1,619,340	-		RPSI07_RS15395	0.64	+1.3
1,619,340	-		RPSI07_RS15395	0.64	-1.0
1,619,341	+		RPSI07_RS15395	0.64	-0.6
1,619,341	+		RPSI07_RS15395	0.64	+1.2
1,619,342	-		RPSI07_RS15395	0.64	+0.6
1,619,342	-		RPSI07_RS15395	0.64	+2.3
1,619,342	-		RPSI07_RS15395	0.64	+0.3
1,619,393	+		RPSI07_RS15395	0.66	-1.8
1,619,394	-		RPSI07_RS15395	0.66	-0.3
1,619,429	+		RPSI07_RS15395	0.67	+2.3
1,619,430	-		RPSI07_RS15395	0.67	+0.2
1,619,430	-		RPSI07_RS15395	0.67	-3.0
1,619,450	+		RPSI07_RS15395	0.68	-0.6
1,619,450	+		RPSI07_RS15395	0.68	+0.2
1,619,450	+		RPSI07_RS15395	0.68	+1.3
1,619,450	+		RPSI07_RS15395	0.68	-0.8
1,619,450	+		RPSI07_RS15395	0.68	+0.5
1,619,451	-		RPSI07_RS15395	0.68	+0.9
1,619,451	-		RPSI07_RS15395	0.68	-1.0
1,619,451	-		RPSI07_RS15395	0.68	-0.5
1,619,451	-		RPSI07_RS15395	0.68	-0.3
1,619,451	-		RPSI07_RS15395	0.68	+0.1
1,619,451	-		RPSI07_RS15395	0.68	-0.3
1,619,486	+		RPSI07_RS15395	0.69	-0.5
1,619,486	+		RPSI07_RS15395	0.69	+0.6
1,619,486	+		RPSI07_RS15395	0.69	-1.3
1,619,486	+		RPSI07_RS15395	0.69	+0.2
1,619,487	-		RPSI07_RS15395	0.69	+0.9
1,619,488	-		RPSI07_RS15395	0.69	-0.8
1,619,552	-		RPSI07_RS15395	0.72	-0.3
1,619,554	-		RPSI07_RS15395	0.72	+0.7
1,619,595	-		RPSI07_RS15395	0.73	-0.4
1,619,603	+		RPSI07_RS15395	0.73	-1.6
1,619,603	+		RPSI07_RS15395	0.73	+0.3
1,619,603	+		RPSI07_RS15395	0.73	-0.1
1,619,603	+		RPSI07_RS15395	0.73	+1.2
1,619,603	+		RPSI07_RS15395	0.73	-0.3
1,619,603	+		RPSI07_RS15395	0.73	+0.9
1,619,604	-		RPSI07_RS15395	0.73	+1.9
1,619,604	-		RPSI07_RS15395	0.73	+0.0
1,619,604	-		RPSI07_RS15395	0.73	+0.4
1,619,604	-		RPSI07_RS15395	0.73	-0.3
1,619,604	-		RPSI07_RS15395	0.73	-2.3
1,619,604	-		RPSI07_RS15395	0.73	+1.2
1,619,630	+		RPSI07_RS15395	0.74	+0.5
1,619,630	+		RPSI07_RS15395	0.74	+2.9
1,619,631	-		RPSI07_RS15395	0.74	-2.2
1,619,631	-		RPSI07_RS15395	0.74	-0.1
1,619,631	-		RPSI07_RS15395	0.74	-0.8
1,619,631	-		RPSI07_RS15395	0.74	-0.1
1,619,714	+		RPSI07_RS15395	0.77	-0.9
1,619,714	+		RPSI07_RS15395	0.77	-1.6
1,619,714	+		RPSI07_RS15395	0.77	-1.8
1,619,714	+		RPSI07_RS15395	0.77	-1.3
1,619,717	+		RPSI07_RS15395	0.78	-0.2
1,619,717	+		RPSI07_RS15395	0.78	-0.3
1,619,717	+		RPSI07_RS15395	0.78	-1.4
1,619,717	+		RPSI07_RS15395	0.78	-1.3
1,619,717	+		RPSI07_RS15395	0.78	-4.3
1,619,717	+		RPSI07_RS15395	0.78	+1.4
1,619,717	+		RPSI07_RS15395	0.78	+0.9
1,619,717	+		RPSI07_RS15395	0.78	-0.1
1,619,717	+		RPSI07_RS15395	0.78	+0.8
1,619,717	+				+0.2
1,619,718	-		RPSI07_RS15395	0.78	-0.8
1,619,718	-		RPSI07_RS15395	0.78	+0.6
1,619,718	-		RPSI07_RS15395	0.78	+1.4
1,619,718	-		RPSI07_RS15395	0.78	+4.5
1,619,718	-		RPSI07_RS15395	0.78	-0.3
1,619,718	-		RPSI07_RS15395	0.78	+0.7
1,619,718	-		RPSI07_RS15395	0.78	+0.8
1,619,718	-		RPSI07_RS15395	0.78	-0.1
1,619,838	-				-0.4
1,619,855	+		RPSI07_RS15395	0.83	+0.5
1,619,856	-		RPSI07_RS15395	0.83	+0.8
1,619,856	-		RPSI07_RS15395	0.83	-0.5
1,619,882	+		RPSI07_RS15395	0.84	+0.8
1,619,882	+		RPSI07_RS15395	0.84	+0.8
1,619,882	+		RPSI07_RS15395	0.84	+0.0
1,619,882	+		RPSI07_RS15395	0.84	-0.2
1,619,883	-				+0.2
1,620,017	+		RPSI07_RS15395	0.88	+0.6
1,620,017	+		RPSI07_RS15395	0.88	+0.6
1,620,017	+		RPSI07_RS15395	0.88	-0.4
1,620,018	-		RPSI07_RS15395	0.88	+0.7
1,620,018	-		RPSI07_RS15395	0.88	+0.5
1,620,018	-		RPSI07_RS15395	0.88	+0.2
1,620,032	+		RPSI07_RS15395	0.89	-0.4
1,620,032	+		RPSI07_RS15395	0.89	-0.2
1,620,032	+		RPSI07_RS15395	0.89	-2.2
1,620,215	+				-0.0
1,620,215	+				-0.6
1,620,216	-				-1.2
1,620,360	+				-0.0
1,620,360	+				+0.6
1,620,360	+				+0.9
1,620,360	+				+0.2
1,620,360	+				+0.0
1,620,361	-				+0.8
1,620,361	-				-0.3
1,620,385	+				-0.8
1,620,386	-				-1.2
1,620,456	+				+1.2
1,620,457	-				+0.5
1,620,465	+				-0.0
1,620,465	+				-0.7
1,620,465	+				-0.0
1,620,465	+				+1.1
1,620,465	+				+1.4
1,620,466	-				+1.2
1,620,466	-				+2.2
1,620,467	-		RPSI07_RS15400	0.10	-1.8
1,620,467	-		RPSI07_RS15400	0.10	+0.8
1,620,600	+		RPSI07_RS15400	0.25	+1.5
1,620,600	+		RPSI07_RS15400	0.25	+0.5
1,620,600	+		RPSI07_RS15400	0.25	+0.3
1,620,601	-		RPSI07_RS15400	0.25	+2.2
1,620,601	-		RPSI07_RS15400	0.25	+1.0
1,620,778	+		RPSI07_RS15400	0.45	+0.7
1,620,778	+		RPSI07_RS15400	0.45	+1.3
1,620,778	+		RPSI07_RS15400	0.45	+0.6
1,620,779	-		RPSI07_RS15400	0.45	-1.3
1,620,779	-		RPSI07_RS15400	0.45	-0.8
1,620,779	-		RPSI07_RS15400	0.45	+0.2
1,620,793	-		RPSI07_RS15400	0.47	-1.0
1,620,793	-		RPSI07_RS15400	0.47	-1.5
1,620,793	-		RPSI07_RS15400	0.47	+1.2
1,621,010	+		RPSI07_RS15400	0.71	-0.7
1,621,011	-		RPSI07_RS15400	0.71	+0.8
1,621,065	+		RPSI07_RS15400	0.77	+0.5
1,621,066	-		RPSI07_RS15400	0.77	-2.4
1,621,131	+		RPSI07_RS15400	0.84	-1.3
1,621,132	-		RPSI07_RS15400	0.84	+0.3
1,621,132	-		RPSI07_RS15400	0.84	+0.3
1,621,132	-		RPSI07_RS15400	0.84	+1.2
1,621,132	-		RPSI07_RS15400	0.84	+2.2
1,621,132	-		RPSI07_RS15400	0.84	+0.7
1,621,309	+				-0.4
1,621,311	+				+1.2
1,621,311	+				+2.2
1,621,311	+				-1.4
1,621,311	+				-1.4
1,621,311	+				-0.0
1,621,311	+				+1.7
1,621,311	+				-1.6
1,621,311	+				-0.6
1,621,311	+				+2.2
1,621,311	+				+0.9
1,621,311	+				+1.2
1,621,312	-				+1.8
1,621,312	-				-0.1
1,621,312	-				+0.6
1,621,312	-				+0.6
1,621,312	-				-0.2
1,621,312	-				-0.3
1,621,312	-				-0.4
1,621,312	-				+0.2
1,621,312	-				-0.6
1,621,330	+				+0.8