Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06035

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS06025 and RPSI07_RS06030 overlap by 4 nucleotidesRPSI07_RS06030 and RPSI07_RS06035 are separated by 12 nucleotidesRPSI07_RS06035 and RPSI07_RS06040 overlap by 4 nucleotides RPSI07_RS06025: RPSI07_RS06025 - adenylyl-sulfate kinase, at 1,636,195 to 1,636,749 _RS06025 RPSI07_RS06030: RPSI07_RS06030 - alpha/beta hydrolase, at 1,636,746 to 1,637,648 _RS06030 RPSI07_RS06035: RPSI07_RS06035 - glycosyl transferase family 8, at 1,637,661 to 1,638,824 _RS06035 RPSI07_RS06040: RPSI07_RS06040 - sulfotransferase family protein, at 1,638,821 to 1,640,923 _RS06040 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1636.682 kb on + strand, within RPSI07_RS06025at 1636.683 kb on - strand, within RPSI07_RS06025at 1636.683 kb on - strand, within RPSI07_RS06025at 1636.683 kb on - strand, within RPSI07_RS06025at 1636.687 kb on + strand, within RPSI07_RS06025at 1636.687 kb on + strand, within RPSI07_RS06025at 1636.687 kb on + strand, within RPSI07_RS06025at 1636.688 kb on - strand, within RPSI07_RS06025at 1636.688 kb on - strand, within RPSI07_RS06025at 1636.727 kb on - strandat 1636.727 kb on - strandat 1636.934 kb on + strand, within RPSI07_RS06030at 1637.068 kb on - strand, within RPSI07_RS06030at 1637.302 kb on + strand, within RPSI07_RS06030at 1637.302 kb on + strand, within RPSI07_RS06030at 1637.303 kb on - strand, within RPSI07_RS06030at 1637.417 kb on + strand, within RPSI07_RS06030at 1637.419 kb on + strand, within RPSI07_RS06030at 1637.419 kb on + strand, within RPSI07_RS06030at 1637.419 kb on + strand, within RPSI07_RS06030at 1637.419 kb on + strand, within RPSI07_RS06030at 1637.419 kb on + strand, within RPSI07_RS06030at 1637.420 kb on - strand, within RPSI07_RS06030at 1637.420 kb on - strand, within RPSI07_RS06030at 1637.420 kb on - strand, within RPSI07_RS06030at 1637.420 kb on - strand, within RPSI07_RS06030at 1637.459 kb on - strand, within RPSI07_RS06030at 1637.484 kb on - strand, within RPSI07_RS06030at 1637.755 kb on + strandat 1637.906 kb on + strand, within RPSI07_RS06035at 1637.907 kb on - strand, within RPSI07_RS06035at 1638.175 kb on + strand, within RPSI07_RS06035at 1638.175 kb on + strand, within RPSI07_RS06035at 1638.176 kb on - strand, within RPSI07_RS06035at 1638.176 kb on - strand, within RPSI07_RS06035at 1638.248 kb on + strand, within RPSI07_RS06035at 1638.249 kb on - strand, within RPSI07_RS06035at 1638.249 kb on - strand, within RPSI07_RS06035at 1638.249 kb on - strand, within RPSI07_RS06035at 1638.514 kb on + strand, within RPSI07_RS06035at 1638.515 kb on - strand, within RPSI07_RS06035at 1638.515 kb on - strand, within RPSI07_RS06035at 1638.526 kb on + strand, within RPSI07_RS06035at 1638.526 kb on + strand, within RPSI07_RS06035at 1638.527 kb on - strand, within RPSI07_RS06035at 1638.527 kb on - strand, within RPSI07_RS06035at 1638.527 kb on - strand, within RPSI07_RS06035at 1638.527 kb on - strand, within RPSI07_RS06035at 1638.527 kb on - strand, within RPSI07_RS06035at 1638.690 kb on + strand, within RPSI07_RS06035at 1638.690 kb on + strand, within RPSI07_RS06035at 1638.864 kb on + strandat 1638.865 kb on - strandat 1638.865 kb on - strandat 1638.903 kb on + strandat 1638.903 kb on + strandat 1638.903 kb on + strandat 1638.904 kb on - strandat 1638.904 kb on - strandat 1638.904 kb on - strandat 1638.904 kb on - strandat 1639.050 kb on + strand, within RPSI07_RS06040at 1639.050 kb on + strand, within RPSI07_RS06040at 1639.051 kb on - strand, within RPSI07_RS06040at 1639.051 kb on - strand, within RPSI07_RS06040at 1639.186 kb on - strand, within RPSI07_RS06040at 1639.186 kb on - strand, within RPSI07_RS06040at 1639.201 kb on + strand, within RPSI07_RS06040at 1639.202 kb on - strand, within RPSI07_RS06040at 1639.202 kb on - strand, within RPSI07_RS06040at 1639.202 kb on - strand, within RPSI07_RS06040at 1639.202 kb on - strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.341 kb on + strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.342 kb on - strand, within RPSI07_RS06040at 1639.578 kb on + strand, within RPSI07_RS06040at 1639.578 kb on + strand, within RPSI07_RS06040at 1639.578 kb on + strand, within RPSI07_RS06040at 1639.578 kb on + strand, within RPSI07_RS06040at 1639.606 kb on + strand, within RPSI07_RS06040at 1639.606 kb on + strand, within RPSI07_RS06040at 1639.607 kb on - strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.641 kb on + strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.642 kb on - strand, within RPSI07_RS06040at 1639.720 kb on - strand, within RPSI07_RS06040at 1639.720 kb on - strand, within RPSI07_RS06040

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
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1,636,682 + RPSI07_RS06025 0.88 -0.1
1,636,683 - RPSI07_RS06025 0.88 +2.0
1,636,683 - RPSI07_RS06025 0.88 +3.9
1,636,683 - RPSI07_RS06025 0.88 +0.6
1,636,687 + RPSI07_RS06025 0.89 +0.8
1,636,687 + RPSI07_RS06025 0.89 -0.7
1,636,687 + RPSI07_RS06025 0.89 -1.0
1,636,688 - RPSI07_RS06025 0.89 -0.3
1,636,688 - RPSI07_RS06025 0.89 -0.3
1,636,727 - +0.1
1,636,727 - -1.0
1,636,934 + RPSI07_RS06030 0.21 -1.3
1,637,068 - RPSI07_RS06030 0.36 -0.1
1,637,302 + RPSI07_RS06030 0.62 -0.1
1,637,302 + RPSI07_RS06030 0.62 +1.9
1,637,303 - RPSI07_RS06030 0.62 -1.5
1,637,417 + RPSI07_RS06030 0.74 +0.0
1,637,419 + RPSI07_RS06030 0.75 -0.9
1,637,419 + RPSI07_RS06030 0.75 -0.9
1,637,419 + RPSI07_RS06030 0.75 -0.1
1,637,419 + RPSI07_RS06030 0.75 +0.4
1,637,419 + RPSI07_RS06030 0.75 -0.6
1,637,420 - RPSI07_RS06030 0.75 +0.3
1,637,420 - RPSI07_RS06030 0.75 -0.2
1,637,420 - RPSI07_RS06030 0.75 +0.1
1,637,420 - RPSI07_RS06030 0.75 -1.7
1,637,459 - RPSI07_RS06030 0.79 -0.8
1,637,484 - RPSI07_RS06030 0.82 -0.4
1,637,755 + +1.5
1,637,906 + RPSI07_RS06035 0.21 -1.7
1,637,907 - RPSI07_RS06035 0.21 -0.5
1,638,175 + RPSI07_RS06035 0.44 +1.7
1,638,175 + RPSI07_RS06035 0.44 +0.8
1,638,176 - RPSI07_RS06035 0.44 +0.1
1,638,176 - RPSI07_RS06035 0.44 -1.5
1,638,248 + RPSI07_RS06035 0.50 -2.0
1,638,249 - RPSI07_RS06035 0.51 +0.3
1,638,249 - RPSI07_RS06035 0.51 +1.8
1,638,249 - RPSI07_RS06035 0.51 +0.7
1,638,514 + RPSI07_RS06035 0.73 -1.0
1,638,515 - RPSI07_RS06035 0.73 +0.1
1,638,515 - RPSI07_RS06035 0.73 +1.6
1,638,526 + RPSI07_RS06035 0.74 +0.0
1,638,526 + RPSI07_RS06035 0.74 +0.2
1,638,527 - RPSI07_RS06035 0.74 +1.8
1,638,527 - RPSI07_RS06035 0.74 -1.5
1,638,527 - RPSI07_RS06035 0.74 -0.3
1,638,527 - RPSI07_RS06035 0.74 -1.0
1,638,527 - RPSI07_RS06035 0.74 -0.3
1,638,690 + RPSI07_RS06035 0.88 -0.8
1,638,690 + RPSI07_RS06035 0.88 -0.7
1,638,864 + -0.9
1,638,865 - -1.3
1,638,865 - +0.5
1,638,903 + +0.3
1,638,903 + +1.3
1,638,903 + -1.2
1,638,904 - -2.0
1,638,904 - +0.1
1,638,904 - +0.3
1,638,904 - -0.2
1,639,050 + RPSI07_RS06040 0.11 +1.3
1,639,050 + RPSI07_RS06040 0.11 -0.7
1,639,051 - RPSI07_RS06040 0.11 -0.2
1,639,051 - RPSI07_RS06040 0.11 -1.5
1,639,186 - RPSI07_RS06040 0.17 -1.5
1,639,186 - RPSI07_RS06040 0.17 -0.1
1,639,201 + RPSI07_RS06040 0.18 -1.1
1,639,202 - RPSI07_RS06040 0.18 -0.2
1,639,202 - RPSI07_RS06040 0.18 +0.1
1,639,202 - RPSI07_RS06040 0.18 -1.9
1,639,202 - RPSI07_RS06040 0.18 -0.4
1,639,341 + RPSI07_RS06040 0.25 +1.8
1,639,341 + RPSI07_RS06040 0.25 +2.3
1,639,341 + RPSI07_RS06040 0.25 -1.1
1,639,341 + RPSI07_RS06040 0.25 -0.1
1,639,341 + RPSI07_RS06040 0.25 +0.3
1,639,341 + RPSI07_RS06040 0.25 -0.4
1,639,341 + RPSI07_RS06040 0.25 +1.5
1,639,341 + RPSI07_RS06040 0.25 -0.2
1,639,341 + RPSI07_RS06040 0.25 -0.8
1,639,341 + RPSI07_RS06040 0.25 +0.1
1,639,342 - RPSI07_RS06040 0.25 -0.1
1,639,342 - RPSI07_RS06040 0.25 +0.7
1,639,342 - RPSI07_RS06040 0.25 -0.4
1,639,342 - RPSI07_RS06040 0.25 -0.4
1,639,342 - RPSI07_RS06040 0.25 +0.8
1,639,342 - RPSI07_RS06040 0.25 -0.8
1,639,342 - RPSI07_RS06040 0.25 +0.5
1,639,342 - RPSI07_RS06040 0.25 -0.4
1,639,342 - RPSI07_RS06040 0.25 +0.9
1,639,342 - RPSI07_RS06040 0.25 -0.9
1,639,578 + RPSI07_RS06040 0.36 -0.2
1,639,578 + RPSI07_RS06040 0.36 +2.7
1,639,578 + RPSI07_RS06040 0.36 +1.9
1,639,578 + RPSI07_RS06040 0.36 -1.7
1,639,606 + RPSI07_RS06040 0.37 +0.3
1,639,606 + RPSI07_RS06040 0.37 +7.1
1,639,607 - RPSI07_RS06040 0.37 -0.3
1,639,641 + RPSI07_RS06040 0.39 +0.3
1,639,641 + RPSI07_RS06040 0.39 +0.6
1,639,641 + RPSI07_RS06040 0.39 -1.0
1,639,641 + RPSI07_RS06040 0.39 +0.2
1,639,641 + RPSI07_RS06040 0.39 +0.9
1,639,641 + RPSI07_RS06040 0.39 -0.2
1,639,641 + RPSI07_RS06040 0.39 -1.1
1,639,641 + RPSI07_RS06040 0.39 +0.6
1,639,641 + RPSI07_RS06040 0.39 +0.3
1,639,641 + RPSI07_RS06040 0.39 +0.0
1,639,641 + RPSI07_RS06040 0.39 -0.7
1,639,642 - RPSI07_RS06040 0.39 -0.5
1,639,642 - RPSI07_RS06040 0.39 -0.6
1,639,642 - RPSI07_RS06040 0.39 +0.5
1,639,642 - RPSI07_RS06040 0.39 -0.5
1,639,642 - RPSI07_RS06040 0.39 -1.7
1,639,642 - RPSI07_RS06040 0.39 +1.3
1,639,642 - RPSI07_RS06040 0.39 -0.0
1,639,642 - RPSI07_RS06040 0.39 -0.1
1,639,642 - RPSI07_RS06040 0.39 -0.7
1,639,642 - RPSI07_RS06040 0.39 -0.4
1,639,720 - RPSI07_RS06040 0.43 -1.0
1,639,720 - RPSI07_RS06040 0.43 +0.5

Or see this region's nucleotide sequence