Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS25330

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
1,874,165	-				-0.7
1,874,165	-				-0.4
1,874,165	-				+0.6
1,874,228	+				+0.7
1,874,232	+				+1.2
1,874,232	+				+1.3
1,874,391	+		RPSI07_RS07070	0.26	-1.7
1,874,391	+		RPSI07_RS07070	0.26	+0.7
1,874,392	-		RPSI07_RS07070	0.26	-0.3
1,874,473	-		RPSI07_RS07070	0.38	-0.9
1,874,505	+		RPSI07_RS07070	0.42	+0.4
1,874,505	+		RPSI07_RS07070	0.42	+0.2
1,874,537	-		RPSI07_RS07070	0.47	+0.3
1,874,537	-		RPSI07_RS07070	0.47	-0.9
1,874,551	+		RPSI07_RS07070	0.49	-0.5
1,874,551	+		RPSI07_RS07070	0.49	-1.1
1,874,552	-		RPSI07_RS07070	0.49	-0.9
1,874,600	-		RPSI07_RS07070	0.56	+0.0
1,874,619	-		RPSI07_RS07070	0.59	+0.9
1,874,651	+		RPSI07_RS07070	0.63	-1.6
1,874,709	-		RPSI07_RS07070	0.72	+0.2
1,874,791	+		RPSI07_RS07070	0.83	-1.1
1,874,791	+		RPSI07_RS07070	0.83	-0.5
1,874,798	+		RPSI07_RS07070	0.84	+0.1
1,874,798	+		RPSI07_RS07070	0.84	-0.2
1,874,799	-		RPSI07_RS07070	0.85	-0.3
1,874,802	+		RPSI07_RS07070	0.85	-1.9
1,874,803	-		RPSI07_RS07070	0.85	+3.1
1,874,803	-		RPSI07_RS07070	0.85	-1.0
1,874,803	-		RPSI07_RS07070	0.85	+1.4
1,874,803	-		RPSI07_RS07070	0.85	+0.7
1,874,803	-		RPSI07_RS07070	0.85	+0.8
1,874,803	-		RPSI07_RS07070	0.85	+0.5
1,874,803	-		RPSI07_RS07070	0.85	-0.1
1,874,803	-		RPSI07_RS07070	0.85	-1.6
1,874,808	+		RPSI07_RS07070	0.86	-0.1
1,874,808	+		RPSI07_RS07070	0.86	+0.9
1,874,809	-		RPSI07_RS07070	0.86	+0.8
1,874,809	-		RPSI07_RS07070	0.86	+0.6
1,874,809	-		RPSI07_RS07070	0.86	-0.1
1,874,809	-		RPSI07_RS07070	0.86	+0.6
1,874,899	-				+0.1
1,874,899	-				+0.5
1,874,899	-				-1.1
1,874,899	-				-1.0
1,874,899	-				+0.1
1,874,899	-				+0.2
1,875,022	-				-2.0
1,875,027	+				+0.4
1,875,027	+				-0.3
1,875,027	+				-1.2
1,875,027	+				+0.9
1,875,028	-				+3.3
1,875,028	-				+0.9
1,875,100	+				-0.1
1,875,100	+				-1.3
1,875,100	+				-0.9
1,875,100	+				-0.6
1,875,100	+				-0.8
1,875,100	+				-0.8
1,875,100	+				+0.7
1,875,100	+				-0.7
1,875,101	-				+0.3
1,875,101	-				-2.5
1,875,103	+				-0.3
1,875,103	+				+0.3
1,875,103	+				-0.9
1,875,103	+				+0.5
1,875,104	-				+2.6
1,875,104	-				+0.0
1,875,187	+				-1.2
1,875,187	+				+2.3
1,875,187	+				-0.6
1,875,187	+				-0.5
1,875,188	-				+0.8
1,875,188	-				-0.3
1,875,188	-				-1.5
1,875,220	+				-0.0
1,875,220	+				-1.4
1,875,220	+				-0.8
1,875,220	+				-1.0
1,875,220	+				+1.3
1,875,220	+				-0.4
1,875,221	-				+6.4
1,875,221	-				-0.9
1,875,221	-				-1.2
1,875,221	-				-1.6
1,875,221	-				-0.9
1,875,326	-		RPSI07_RS25330	0.19	+0.9
1,875,326	-		RPSI07_RS25330	0.19	-2.7
1,875,326	-		RPSI07_RS25330	0.19	+0.3
1,875,326	-		RPSI07_RS25330	0.19	-1.1
1,875,326	-		RPSI07_RS25330	0.19	-0.2
1,875,326	-		RPSI07_RS25330	0.19	-1.0
1,875,326	-		RPSI07_RS25330	0.19	-2.9
1,875,382	+		RPSI07_RS25330	0.24	+2.2
1,875,382	+		RPSI07_RS25330	0.24	-0.3
1,875,382	+		RPSI07_RS25330	0.24	+0.3
1,875,382	+		RPSI07_RS25330	0.24	+0.9
1,875,490	+		RPSI07_RS25330	0.34	-0.9
1,875,490	+		RPSI07_RS25330	0.34	+0.6
1,875,490	+		RPSI07_RS25330	0.34	-0.5
1,875,490	+		RPSI07_RS25330	0.34	-1.6
1,875,490	+		RPSI07_RS25330	0.34	+0.7
1,875,490	+		RPSI07_RS25330	0.34	+0.6
1,875,490	+		RPSI07_RS25330	0.34	+1.7
1,875,490	+		RPSI07_RS25330	0.34	+1.6
1,875,490	+		RPSI07_RS25330	0.34	-1.5
1,875,490	+		RPSI07_RS25330	0.34	+0.8
1,875,490	+		RPSI07_RS25330	0.34	+0.6
1,875,490	+		RPSI07_RS25330	0.34	-1.2
1,875,490	+		RPSI07_RS25330	0.34	-0.6
1,875,490	+		RPSI07_RS25330	0.34	-0.2
1,875,490	+		RPSI07_RS25330	0.34	+0.0
1,875,490	+		RPSI07_RS25330	0.34	-1.1
1,875,490	+		RPSI07_RS25330	0.34	-2.0
1,875,490	+		RPSI07_RS25330	0.34	-0.3
1,875,606	+		RPSI07_RS25330	0.44	-0.4
1,875,712	+		RPSI07_RS25330	0.54	+0.4
1,875,723	+		RPSI07_RS25330	0.55	-1.7
1,875,723	+		RPSI07_RS25330	0.55	-0.3
1,875,723	+		RPSI07_RS25330	0.55	-0.9
1,875,723	+		RPSI07_RS25330	0.55	-0.9
1,875,723	+		RPSI07_RS25330	0.55	-1.4
1,875,746	+		RPSI07_RS25330	0.57	+0.5
1,875,746	+		RPSI07_RS25330	0.57	-0.0
1,875,746	+		RPSI07_RS25330	0.57	-0.1
1,875,746	+		RPSI07_RS25330	0.57	-0.9
1,875,746	+		RPSI07_RS25330	0.57	-0.7
1,875,747	-		RPSI07_RS25330	0.57	-0.4
1,875,747	-		RPSI07_RS25330	0.57	-0.2
1,875,747	-		RPSI07_RS25330	0.57	-0.5
1,875,831	+		RPSI07_RS25330	0.65	+0.5
1,875,831	+		RPSI07_RS25330	0.65	+0.3
1,875,862	+		RPSI07_RS25330	0.68	-1.0
1,875,862	+		RPSI07_RS25330	0.68	-1.1
1,875,862	+		RPSI07_RS25330	0.68	+0.8
1,875,863	-		RPSI07_RS25330	0.68	-2.3
1,876,109	+		RPSI07_RS25330	0.90	-0.4
1,876,109	+		RPSI07_RS25330	0.90	-0.1
1,876,109	+		RPSI07_RS25330	0.90	+2.3
1,876,109	+		RPSI07_RS25330	0.90	+0.6
1,876,109	+		RPSI07_RS25330	0.90	+1.3
1,876,109	+		RPSI07_RS25330	0.90	-0.3
1,876,109	+		RPSI07_RS25330	0.90	+0.2
1,876,109	+		RPSI07_RS25330	0.90	-0.3
1,876,110	-		RPSI07_RS25330	0.90	+0.5
1,876,110	-		RPSI07_RS25330	0.90	-0.0
1,876,250	+				+0.7
1,876,250	+				+1.3
1,876,250	+				+0.1
1,876,250	+				-0.8
1,876,250	+				+0.9
1,876,250	+				-1.2
1,876,251	-				+0.2
1,876,251	-				-0.3
1,876,253	+				-2.5
1,876,253	+				+0.0
1,876,253	+				-0.8
1,876,253	+				-0.6
1,876,253	+				+0.3
1,876,253	+				-0.0
1,876,253	+				-1.6
1,876,253	+				+1.6
1,876,253	+				-1.7
1,876,274	+				+1.3
1,876,342	+		RPSI07_RS24730	0.27	-0.3
1,876,342	+		RPSI07_RS24730	0.27	-0.1
1,876,342	+		RPSI07_RS24730	0.27	-0.2
1,876,342	+		RPSI07_RS24730	0.27	+0.2
1,876,342	+		RPSI07_RS24730	0.27	+0.4
1,876,343	-		RPSI07_RS24730	0.27	-0.0
1,876,343	-		RPSI07_RS24730	0.27	+1.1
1,876,343	-		RPSI07_RS24730	0.27	-0.8
1,876,343	-		RPSI07_RS24730	0.27	-0.3
1,876,343	-		RPSI07_RS24730	0.27	+1.1
1,876,343	-		RPSI07_RS24730	0.27	-0.4
1,876,463	+		RPSI07_RS24730	0.85	+0.4
1,876,463	+		RPSI07_RS24730	0.85	+0.1
1,876,464	-		RPSI07_RS24730	0.86	+0.6
1,876,464	-		RPSI07_RS24730	0.86	-0.6
1,876,464	-		RPSI07_RS24730	0.86	-1.3
1,876,464	-		RPSI07_RS24730	0.86	+0.7
1,876,514	+				-1.7
1,876,514	+				+0.3
1,876,514	+				+0.8
1,876,514	+				+0.3
1,876,514	+				+0.3
1,876,514	+				+0.8
1,876,515	-				+0.4
1,876,515	-				+0.4
1,876,515	-				+1.3
1,876,515	-				+0.3
1,876,523	+				+0.4
1,876,523	+				-0.9
1,876,523	+				+3.1
1,876,523	+				+0.7
1,876,523	+				+0.2
1,876,524	-				+0.5
1,876,525	-				-1.3
1,876,551	+				-0.6
1,876,551	+				-0.2
1,876,552	-				-0.2
1,876,552	-				+0.1
1,876,575	+				-0.6
1,876,590	+				-1.1
1,876,590	+				-1.0
1,876,590	+				+2.5
1,876,590	+				+0.1
1,876,590	+				+1.7
1,876,591	-				-0.3
1,876,591	-				+0.1
1,876,591	-				-1.1
1,876,591	-				+1.6
1,876,591	-				-2.9
1,876,591	-				+2.7
1,876,591	-				-1.2
1,876,591	-				+0.4
1,876,592	-				+0.6
1,876,719	+				+5.1
1,876,719	+				+0.1
1,876,720	-				+0.4
1,876,761	+				-0.3
1,876,761	+				-0.4
1,876,761	+				-0.2
1,876,761	+				-0.5
1,876,762	-				+0.3
1,876,762	-				+0.4
1,876,762	-				+0.7
1,876,762	-				-0.2
1,876,813	+				-0.2
1,876,814	+				-1.9
1,876,814	+				+2.1
1,876,814	+				-0.1
1,876,814	+				-0.9
1,876,814	+				+2.1
1,876,814	+				-1.1
1,876,814	+				-0.9
1,876,815	-				-0.9
1,876,815	-				-0.8
1,876,815	-				-2.6
1,876,815	-				-1.0
1,876,815	-				+1.5
1,876,815	-				+0.1
1,876,815	-				+0.1
1,876,815	-				-1.1
1,876,815	-				+0.1
1,876,815	-				+0.1
1,876,815	-				+0.0
1,876,815	-				-0.8
1,876,832	+				-0.8
1,876,833	-				-0.3
1,876,833	-				+0.5
1,876,833	-				-1.3
1,876,877	-				-0.1
1,876,877	-				-0.4
1,877,062	+				-0.7
1,877,062	+				+1.8
1,877,063	-				+0.2
1,877,063	-				-0.3
1,877,063	-				-0.6
1,877,063	-				+0.4
1,877,063	-				-0.2
1,877,063	-				-0.9
1,877,063	-				-0.6
1,877,063	-				+0.1
1,877,088	+				-1.6
1,877,088	+				-1.1
1,877,088	+				-1.0
1,877,088	+				+0.4
1,877,089	-				+0.1
1,877,089	-				-2.5
1,877,155	-				-0.3
1,877,155	-				-0.9
1,877,155	-				+3.6