Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16660

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
1,928,936	+		RPSI07_RS16655	0.79	-0.9
1,928,937	-		RPSI07_RS16655	0.79	-0.2
1,929,002	+		RPSI07_RS16655	0.82	-0.2
1,929,003	-		RPSI07_RS16655	0.82	+0.9
1,929,020	-		RPSI07_RS16655	0.83	+0.3
1,929,020	-		RPSI07_RS16655	0.83	-0.9
1,929,032	+		RPSI07_RS16655	0.83	-1.5
1,929,032	+		RPSI07_RS16655	0.83	+2.2
1,929,032	+		RPSI07_RS16655	0.83	+0.5
1,929,033	-		RPSI07_RS16655	0.83	-0.8
1,929,033	-		RPSI07_RS16655	0.83	+1.6
1,929,053	+		RPSI07_RS16655	0.84	-0.1
1,929,053	+		RPSI07_RS16655	0.84	-0.4
1,929,054	-		RPSI07_RS16655	0.84	-0.7
1,929,054	-		RPSI07_RS16655	0.84	-0.5
1,929,095	+		RPSI07_RS16655	0.86	-0.8
1,929,096	-		RPSI07_RS16655	0.86	-0.3
1,929,369	+				+0.2
1,929,369	+				-3.1
1,929,369	+				+1.2
1,929,369	+				-0.4
1,929,369	+				+0.8
1,929,369	+				-0.3
1,929,369	+				-0.4
1,929,369	+				-1.5
1,929,370	-				+1.4
1,929,370	-				+1.8
1,929,370	-				-0.6
1,929,370	-				+0.4
1,929,370	-				+0.1
1,929,423	+				-0.1
1,929,423	-				+0.0
1,929,514	+				+0.8
1,929,659	+				+0.6
1,929,659	+				-0.1
1,929,659	+				+0.5
1,929,660	-				-2.4
1,929,660	-				-0.0
1,929,660	-				+0.8
1,929,660	-				-0.9
1,929,660	-				-1.0
1,929,882	+				-0.8
1,929,882	+				+0.5
1,929,883	-				+4.1
1,929,909	+				+0.8
1,930,173	+				+0.4
1,930,173	+				+0.2
1,930,173	+				+0.8
1,930,174	-				+1.2
1,930,289	+				+0.5
1,930,290	-				-0.9
1,930,380	+				-0.6
1,930,381	-				+0.7
1,930,381	-				-1.3
1,930,381	-				+0.7
1,930,381	-				+0.4
1,930,381	-				+1.0
1,930,711	-				+0.2
1,930,803	+				-0.9
1,931,094	+		RPSI07_RS16660	0.11	-1.0
1,932,264	+		RPSI07_RS16660	0.20	+0.3
1,932,540	+		RPSI07_RS16660	0.23	+1.2
1,932,540	+		RPSI07_RS16660	0.23	-1.5
1,932,541	-		RPSI07_RS16660	0.23	-0.9
1,932,541	-		RPSI07_RS16660	0.23	-1.4
1,932,750	+		RPSI07_RS16660	0.24	-0.8
1,932,750	+		RPSI07_RS16660	0.24	-0.1
1,932,798	+		RPSI07_RS16660	0.25	-0.9
1,932,799	-		RPSI07_RS16660	0.25	+0.1
1,933,074	+		RPSI07_RS16660	0.27	+0.5
1,933,471	+		RPSI07_RS16660	0.30	+0.2
1,933,472	-		RPSI07_RS16660	0.30	-1.1
1,933,472	-		RPSI07_RS16660	0.30	+1.2
1,933,473	+		RPSI07_RS16660	0.30	-1.6
1,933,473	+		RPSI07_RS16660	0.30	-1.9
1,933,473	+		RPSI07_RS16660	0.30	-0.2
1,933,474	-		RPSI07_RS16660	0.30	-0.4
1,933,602	+		RPSI07_RS16660	0.31	+0.2
1,934,370	+		RPSI07_RS16660	0.37	-0.9
1,934,370	+		RPSI07_RS16660	0.37	+1.2
1,934,466	+		RPSI07_RS16660	0.38	-0.0
1,934,467	-		RPSI07_RS16660	0.38	+0.0
1,934,467	-		RPSI07_RS16660	0.38	-0.4
1,934,479	-		RPSI07_RS16660	0.38	-1.0
1,934,613	+		RPSI07_RS16660	0.39	+0.1
1,934,613	+		RPSI07_RS16660	0.39	-0.8
1,934,613	+		RPSI07_RS16660	0.39	+0.6
1,934,614	-		RPSI07_RS16660	0.39	-0.0
1,934,830	+		RPSI07_RS16660	0.40	+0.2
1,934,830	+		RPSI07_RS16660	0.40	-1.6
1,934,830	+		RPSI07_RS16660	0.40	+0.6
1,934,831	-		RPSI07_RS16660	0.40	+1.2
1,934,976	+		RPSI07_RS16660	0.42	-2.7
1,935,180	+		RPSI07_RS16660	0.43	-1.5
1,935,180	+		RPSI07_RS16660	0.43	+0.8
1,935,548	+		RPSI07_RS16660	0.46	+0.1
1,935,549	-		RPSI07_RS16660	0.46	-0.3
1,936,390	-		RPSI07_RS16660	0.53	-0.1
1,936,390	-		RPSI07_RS16660	0.53	+0.0
1,936,390	-		RPSI07_RS16660	0.53	+1.8
1,936,390	-		RPSI07_RS16660	0.53	+2.8
1,936,390	-		RPSI07_RS16660	0.53	-0.7
1,936,420	-		RPSI07_RS16660	0.53	+0.6
1,936,478	+		RPSI07_RS16660	0.53	+0.2
1,936,478	+		RPSI07_RS16660	0.53	-0.4
1,936,479	-		RPSI07_RS16660	0.53	+0.2
1,936,725	-		RPSI07_RS16660	0.55	+0.2
1,936,857	+		RPSI07_RS16660	0.56	+0.2
1,936,857	+		RPSI07_RS16660	0.56	-0.8
1,936,858	-		RPSI07_RS16660	0.56	+0.3
1,936,858	-		RPSI07_RS16660	0.56	-1.4
1,936,858	-		RPSI07_RS16660	0.56	+0.7
1,936,858	-		RPSI07_RS16660	0.56	-2.8
1,936,872	+		RPSI07_RS16660	0.56	-0.2
1,936,873	-		RPSI07_RS16660	0.56	-1.4
1,936,873	-		RPSI07_RS16660	0.56	+0.2
1,936,921	-		RPSI07_RS16660	0.57	-0.2
1,937,414	+		RPSI07_RS16660	0.61	+0.7
1,937,538	+		RPSI07_RS16660	0.62	+0.7
1,937,539	-		RPSI07_RS16660	0.62	+0.0
1,937,539	-		RPSI07_RS16660	0.62	-0.1
1,937,539	-		RPSI07_RS16660	0.62	-2.2
1,937,539	-		RPSI07_RS16660	0.62	+0.1
1,937,601	+		RPSI07_RS16660	0.62	+0.0
1,937,602	-		RPSI07_RS16660	0.62	+0.6
1,937,602	-		RPSI07_RS16660	0.62	-0.4
1,937,602	-		RPSI07_RS16660	0.62	-0.3
1,937,602	-		RPSI07_RS16660	0.62	+0.0
1,937,734	-		RPSI07_RS16660	0.63	-0.8
1,937,814	+		RPSI07_RS16660	0.64	-1.1
1,937,814	+		RPSI07_RS16660	0.64	-0.4
1,937,815	-		RPSI07_RS16660	0.64	+2.7
1,937,961	+		RPSI07_RS16660	0.65	-0.8
1,937,961	+		RPSI07_RS16660	0.65	-1.1
1,937,961	+		RPSI07_RS16660	0.65	-0.9
1,937,961	+		RPSI07_RS16660	0.65	-2.4
1,937,962	-		RPSI07_RS16660	0.65	+0.5
1,937,962	-		RPSI07_RS16660	0.65	-1.3
1,937,962	-		RPSI07_RS16660	0.65	-1.5
1,937,962	-		RPSI07_RS16660	0.65	-1.3
1,937,965	+		RPSI07_RS16660	0.65	+0.2
1,937,966	-		RPSI07_RS16660	0.65	-0.8
1,938,177	+		RPSI07_RS16660	0.67	-0.8
1,938,177	+		RPSI07_RS16660	0.67	-0.9
1,938,178	-		RPSI07_RS16660	0.67	-0.8
1,938,186	+		RPSI07_RS16660	0.67	-0.7
1,938,187	-		RPSI07_RS16660	0.67	-0.8
1,938,318	+		RPSI07_RS16660	0.68	+0.5
1,938,318	+		RPSI07_RS16660	0.68	-0.1
1,938,318	+		RPSI07_RS16660	0.68	-1.4
1,938,336	+		RPSI07_RS16660	0.68	-0.6
1,938,694	-		RPSI07_RS16660	0.71	-2.0
1,938,720	+		RPSI07_RS16660	0.71	-0.1
1,938,721	-		RPSI07_RS16660	0.71	-0.7
1,938,759	+		RPSI07_RS16660	0.71	+1.4
1,938,808	-		RPSI07_RS16660	0.71	+1.2
1,939,576	-		RPSI07_RS16660	0.77	-0.7
1,939,753	+		RPSI07_RS16660	0.79	-0.4
1,939,753	+		RPSI07_RS16660	0.79	+2.2
1,939,776	+		RPSI07_RS16660	0.79	+0.3
1,939,776	+		RPSI07_RS16660	0.79	+0.2
1,939,917	+		RPSI07_RS16660	0.80	+2.2
1,939,918	-		RPSI07_RS16660	0.80	-0.4
1,940,088	+		RPSI07_RS16660	0.81	-2.6
1,940,322	+		RPSI07_RS16660	0.83	-0.7
1,940,323	-		RPSI07_RS16660	0.83	+1.8
1,940,323	-		RPSI07_RS16660	0.83	-0.8
1,940,323	-		RPSI07_RS16660	0.83	+3.5
1,940,323	-		RPSI07_RS16660	0.83	+0.6
1,940,323	-		RPSI07_RS16660	0.83	-0.6
1,940,323	-		RPSI07_RS16660	0.83	-0.8
1,940,679	+		RPSI07_RS16660	0.86	+0.6
1,940,760	+		RPSI07_RS16660	0.87	+2.2
1,940,760	+		RPSI07_RS16660	0.87	-2.4
1,940,814	+		RPSI07_RS16660	0.87	-0.7
1,940,815	-		RPSI07_RS16660	0.87	-1.2
1,940,815	-		RPSI07_RS16660	0.87	+1.6
1,941,237	+				+0.4
1,941,276	+				+1.5
1,941,276	+				-0.0
1,941,524	+				+2.2
1,941,525	-				+0.4
1,941,525	-				-0.6
1,941,692	+				+3.2
1,941,692	+				-2.1
1,941,692	+				+0.5
1,941,692	+				+0.9
1,941,692	+				-0.4
1,941,692	+				-0.3
1,941,692	+				-0.3
1,941,692	+				-0.4
1,941,693	-				-0.6
1,941,693	-				-0.0
1,941,693	-				-1.4
1,941,693	-				+0.3
1,941,773	-				+0.6
1,941,840	+				+0.0
1,941,910	-				+1.4
1,941,910	-				+0.6
1,942,464	+				-0.4
1,942,464	+				+1.0
1,942,465	-				-0.0
1,942,465	-				+0.2
1,942,465	-				+1.2
1,942,732	+				-0.3
1,942,732	+				-0.8
1,942,732	+				+0.5
1,942,732	+				-2.5
1,942,733	-				-1.1
1,942,733	-				-0.0
1,942,733	-				+0.4
1,942,733	-				+0.3
1,942,733	-				+0.6
1,942,733	-				+0.0
1,942,733	-				-1.8
1,942,733	-				+0.2
1,942,771	+				-0.1
1,942,771	+				-0.4
1,942,772	-				-0.4
1,942,772	-				+0.3
1,942,772	-				-2.0
1,943,030	+		RPSI07_RS16665	0.28	-0.8
1,943,030	+		RPSI07_RS16665	0.28	-1.3
1,943,030	+		RPSI07_RS16665	0.28	+0.3
1,943,030	+		RPSI07_RS16665	0.28	+2.5
1,943,030	+		RPSI07_RS16665	0.28	-1.2
1,943,031	-		RPSI07_RS16665	0.28	-0.1
1,943,031	-		RPSI07_RS16665	0.28	+0.6
1,943,031	-		RPSI07_RS16665	0.28	+1.2
1,943,031	-		RPSI07_RS16665	0.28	-1.3
1,943,031	-		RPSI07_RS16665	0.28	+1.2
1,943,122	+		RPSI07_RS16665	0.36	-1.1
1,943,158	+		RPSI07_RS16665	0.39	-1.2
1,943,158	+		RPSI07_RS16665	0.39	-0.7
1,943,227	+		RPSI07_RS16665	0.45	-1.2
1,943,369	+		RPSI07_RS16665	0.57	-1.5
1,943,369	+		RPSI07_RS16665	0.57	-0.7
1,943,370	-		RPSI07_RS16665	0.57	-0.1
1,943,370	-		RPSI07_RS16665	0.57	-0.1
1,943,396	-		RPSI07_RS16665	0.60	-0.6