Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16560

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS16550 and RPSI07_RS16555 are separated by 0 nucleotidesRPSI07_RS16555 and RPSI07_RS16560 are separated by 39 nucleotidesRPSI07_RS16560 and RPSI07_RS16565 are separated by 495 nucleotides RPSI07_RS16550: RPSI07_RS16550 - hypothetical protein, at 1,874,668 to 1,875,804 _RS16550 RPSI07_RS16555: RPSI07_RS16555 - hypothetical protein, at 1,875,805 to 1,876,260 _RS16555 RPSI07_RS16560: RPSI07_RS16560 - MFS transporter, at 1,876,300 to 1,877,739 _RS16560 RPSI07_RS16565: RPSI07_RS16565 - hypothetical protein, at 1,878,235 to 1,878,597 _RS16565 Position (kb) 1876 1877 1878Strain fitness (log2 ratio) -2 -1 0 1at 1875.301 kb on + strand, within RPSI07_RS16550at 1875.302 kb on - strand, within RPSI07_RS16550at 1875.307 kb on + strand, within RPSI07_RS16550at 1875.308 kb on - strand, within RPSI07_RS16550at 1875.308 kb on - strand, within RPSI07_RS16550at 1875.373 kb on + strand, within RPSI07_RS16550at 1875.373 kb on + strand, within RPSI07_RS16550at 1875.685 kb on - strand, within RPSI07_RS16550at 1875.816 kb on + strandat 1875.828 kb on + strandat 1875.859 kb on - strand, within RPSI07_RS16555at 1875.905 kb on - strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.906 kb on + strand, within RPSI07_RS16555at 1875.907 kb on - strand, within RPSI07_RS16555at 1875.907 kb on - strand, within RPSI07_RS16555at 1875.907 kb on - strand, within RPSI07_RS16555at 1875.952 kb on + strand, within RPSI07_RS16555at 1876.056 kb on - strand, within RPSI07_RS16555at 1876.359 kb on - strandat 1876.532 kb on + strand, within RPSI07_RS16560at 1876.532 kb on + strand, within RPSI07_RS16560at 1876.541 kb on + strand, within RPSI07_RS16560at 1876.542 kb on - strand, within RPSI07_RS16560at 1876.542 kb on - strand, within RPSI07_RS16560at 1876.694 kb on + strand, within RPSI07_RS16560at 1876.694 kb on + strand, within RPSI07_RS16560at 1876.695 kb on - strand, within RPSI07_RS16560at 1876.749 kb on - strand, within RPSI07_RS16560at 1876.749 kb on - strand, within RPSI07_RS16560at 1876.818 kb on - strand, within RPSI07_RS16560at 1876.818 kb on - strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.255 kb on + strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.256 kb on - strand, within RPSI07_RS16560at 1877.366 kb on + strand, within RPSI07_RS16560at 1877.366 kb on + strand, within RPSI07_RS16560at 1877.406 kb on - strand, within RPSI07_RS16560at 1877.406 kb on - strand, within RPSI07_RS16560at 1877.406 kb on - strand, within RPSI07_RS16560at 1877.552 kb on + strand, within RPSI07_RS16560at 1877.552 kb on + strand, within RPSI07_RS16560at 1877.573 kb on + strand, within RPSI07_RS16560at 1877.574 kb on - strand, within RPSI07_RS16560at 1877.574 kb on - strand, within RPSI07_RS16560at 1877.593 kb on + strand, within RPSI07_RS16560at 1877.594 kb on - strand, within RPSI07_RS16560at 1877.632 kb on - strandat 1877.782 kb on + strandat 1877.782 kb on + strandat 1877.782 kb on + strandat 1877.782 kb on + strandat 1877.783 kb on - strandat 1877.783 kb on - strandat 1877.863 kb on - strandat 1878.076 kb on + strandat 1878.167 kb on + strandat 1878.167 kb on + strandat 1878.230 kb on + strandat 1878.337 kb on - strand, within RPSI07_RS16565at 1878.738 kb on + strandat 1878.738 kb on + strandat 1878.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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1,875,301 + RPSI07_RS16550 0.56 -0.7
1,875,302 - RPSI07_RS16550 0.56 -0.4
1,875,307 + RPSI07_RS16550 0.56 +0.8
1,875,308 - RPSI07_RS16550 0.56 -0.5
1,875,308 - RPSI07_RS16550 0.56 -0.3
1,875,373 + RPSI07_RS16550 0.62 +0.1
1,875,373 + RPSI07_RS16550 0.62 -0.8
1,875,685 - RPSI07_RS16550 0.89 +0.4
1,875,816 + -0.3
1,875,828 + +1.2
1,875,859 - RPSI07_RS16555 0.12 -0.6
1,875,905 - RPSI07_RS16555 0.22 +1.5
1,875,906 + RPSI07_RS16555 0.22 +0.2
1,875,906 + RPSI07_RS16555 0.22 -1.4
1,875,906 + RPSI07_RS16555 0.22 +0.2
1,875,906 + RPSI07_RS16555 0.22 -0.2
1,875,907 - RPSI07_RS16555 0.22 -1.2
1,875,907 - RPSI07_RS16555 0.22 +0.2
1,875,907 - RPSI07_RS16555 0.22 +0.2
1,875,952 + RPSI07_RS16555 0.32 -0.8
1,876,056 - RPSI07_RS16555 0.55 -0.4
1,876,359 - -0.9
1,876,532 + RPSI07_RS16560 0.16 +0.2
1,876,532 + RPSI07_RS16560 0.16 +0.1
1,876,541 + RPSI07_RS16560 0.17 -0.9
1,876,542 - RPSI07_RS16560 0.17 +1.5
1,876,542 - RPSI07_RS16560 0.17 +0.3
1,876,694 + RPSI07_RS16560 0.27 -1.7
1,876,694 + RPSI07_RS16560 0.27 -1.4
1,876,695 - RPSI07_RS16560 0.27 +1.7
1,876,749 - RPSI07_RS16560 0.31 +0.2
1,876,749 - RPSI07_RS16560 0.31 -0.3
1,876,818 - RPSI07_RS16560 0.36 +0.2
1,876,818 - RPSI07_RS16560 0.36 +0.3
1,877,255 + RPSI07_RS16560 0.66 -1.0
1,877,255 + RPSI07_RS16560 0.66 +0.0
1,877,255 + RPSI07_RS16560 0.66 -0.9
1,877,255 + RPSI07_RS16560 0.66 +0.0
1,877,255 + RPSI07_RS16560 0.66 -1.3
1,877,255 + RPSI07_RS16560 0.66 +0.8
1,877,255 + RPSI07_RS16560 0.66 +1.6
1,877,255 + RPSI07_RS16560 0.66 -2.1
1,877,256 - RPSI07_RS16560 0.66 +0.6
1,877,256 - RPSI07_RS16560 0.66 -0.8
1,877,256 - RPSI07_RS16560 0.66 +1.2
1,877,256 - RPSI07_RS16560 0.66 +0.6
1,877,256 - RPSI07_RS16560 0.66 +0.5
1,877,256 - RPSI07_RS16560 0.66 -1.1
1,877,366 + RPSI07_RS16560 0.74 +0.5
1,877,366 + RPSI07_RS16560 0.74 -0.8
1,877,406 - RPSI07_RS16560 0.77 -0.0
1,877,406 - RPSI07_RS16560 0.77 +0.8
1,877,406 - RPSI07_RS16560 0.77 +0.2
1,877,552 + RPSI07_RS16560 0.87 -1.0
1,877,552 + RPSI07_RS16560 0.87 +0.3
1,877,573 + RPSI07_RS16560 0.88 +1.0
1,877,574 - RPSI07_RS16560 0.88 -1.0
1,877,574 - RPSI07_RS16560 0.88 +0.2
1,877,593 + RPSI07_RS16560 0.90 +0.4
1,877,594 - RPSI07_RS16560 0.90 -0.4
1,877,632 - -1.1
1,877,782 + +0.3
1,877,782 + +0.9
1,877,782 + +0.9
1,877,782 + +1.2
1,877,783 - -1.1
1,877,783 - -1.9
1,877,863 - -1.8
1,878,076 + +0.6
1,878,167 + -2.1
1,878,167 + +0.2
1,878,230 + -1.1
1,878,337 - RPSI07_RS16565 0.28 +0.1
1,878,738 + -0.6
1,878,738 + +0.7
1,878,739 - -0.6

Or see this region's nucleotide sequence