Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS12185

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRPSI07_RS12175 and RPSI07_RS12180 are separated by 25 nucleotidesRPSI07_RS12180 and RPSI07_RS12185 overlap by 7 nucleotidesRPSI07_RS12185 and RPSI07_RS12190 are separated by 48 nucleotides RPSI07_RS12175: RPSI07_RS12175 - tRNA epoxyqueuosine(34) reductase QueG, at 930,508 to 931,659 _RS12175 RPSI07_RS12180: RPSI07_RS12180 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 931,685 to 932,254 _RS12180 RPSI07_RS12185: RPSI07_RS12185 - N-acetylmuramoyl-L-alanine amidase, at 932,248 to 933,771 _RS12185 RPSI07_RS12190: RPSI07_RS12190 - bile acid:sodium symporter, at 933,820 to 934,839 _RS12190 Position (kb) 932 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 931.266 kb on - strand, within RPSI07_RS12175at 931.364 kb on + strand, within RPSI07_RS12175at 931.364 kb on + strand, within RPSI07_RS12175at 931.364 kb on + strand, within RPSI07_RS12175at 931.364 kb on + strand, within RPSI07_RS12175at 931.364 kb on + strand, within RPSI07_RS12175at 931.365 kb on - strand, within RPSI07_RS12175at 931.365 kb on - strand, within RPSI07_RS12175at 931.365 kb on - strand, within RPSI07_RS12175at 931.365 kb on - strand, within RPSI07_RS12175at 931.445 kb on + strand, within RPSI07_RS12175at 931.446 kb on + strand, within RPSI07_RS12175at 931.446 kb on + strand, within RPSI07_RS12175at 931.446 kb on + strand, within RPSI07_RS12175at 931.446 kb on + strand, within RPSI07_RS12175at 931.447 kb on - strand, within RPSI07_RS12175at 931.447 kb on - strand, within RPSI07_RS12175at 931.447 kb on - strand, within RPSI07_RS12175at 931.447 kb on - strand, within RPSI07_RS12175at 931.447 kb on - strand, within RPSI07_RS12175at 931.448 kb on + strand, within RPSI07_RS12175at 931.448 kb on + strandat 931.448 kb on + strand, within RPSI07_RS12175at 931.448 kb on + strand, within RPSI07_RS12175at 931.663 kb on + strandat 931.663 kb on + strandat 931.670 kb on + strandat 932.431 kb on + strand, within RPSI07_RS12185at 932.432 kb on - strand, within RPSI07_RS12185at 932.581 kb on + strand, within RPSI07_RS12185at 932.581 kb on + strand, within RPSI07_RS12185at 932.582 kb on - strand, within RPSI07_RS12185at 932.719 kb on + strand, within RPSI07_RS12185at 933.233 kb on - strand, within RPSI07_RS12185at 933.233 kb on - strand, within RPSI07_RS12185at 933.683 kb on - strandat 933.926 kb on + strand, within RPSI07_RS12190at 933.926 kb on + strand, within RPSI07_RS12190at 933.926 kb on + strand, within RPSI07_RS12190at 933.927 kb on - strand, within RPSI07_RS12190at 933.927 kb on - strand, within RPSI07_RS12190at 933.927 kb on - strand, within RPSI07_RS12190at 933.927 kb on - strand, within RPSI07_RS12190at 933.927 kb on - strand, within RPSI07_RS12190at 933.927 kb on - strand, within RPSI07_RS12190at 934.154 kb on + strand, within RPSI07_RS12190at 934.155 kb on - strand, within RPSI07_RS12190at 934.250 kb on + strand, within RPSI07_RS12190at 934.250 kb on + strand, within RPSI07_RS12190at 934.250 kb on + strand, within RPSI07_RS12190at 934.250 kb on + strand, within RPSI07_RS12190at 934.250 kb on + strand, within RPSI07_RS12190at 934.251 kb on - strand, within RPSI07_RS12190at 934.251 kb on - strand, within RPSI07_RS12190at 934.251 kb on - strand, within RPSI07_RS12190at 934.251 kb on - strand, within RPSI07_RS12190at 934.251 kb on - strand, within RPSI07_RS12190at 934.437 kb on - strand, within RPSI07_RS12190at 934.517 kb on + strand, within RPSI07_RS12190at 934.518 kb on - strand, within RPSI07_RS12190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
remove
931,266 - RPSI07_RS12175 0.66 +1.4
931,364 + RPSI07_RS12175 0.74 -1.4
931,364 + RPSI07_RS12175 0.74 +1.4
931,364 + RPSI07_RS12175 0.74 +0.0
931,364 + RPSI07_RS12175 0.74 +0.4
931,364 + RPSI07_RS12175 0.74 -0.2
931,365 - RPSI07_RS12175 0.74 -1.2
931,365 - RPSI07_RS12175 0.74 +0.6
931,365 - RPSI07_RS12175 0.74 -1.2
931,365 - RPSI07_RS12175 0.74 -2.6
931,445 + RPSI07_RS12175 0.81 -1.2
931,446 + RPSI07_RS12175 0.81 -0.5
931,446 + RPSI07_RS12175 0.81 -0.2
931,446 + RPSI07_RS12175 0.81 -1.8
931,446 + RPSI07_RS12175 0.81 -0.2
931,447 - RPSI07_RS12175 0.82 +0.4
931,447 - RPSI07_RS12175 0.82 +1.4
931,447 - RPSI07_RS12175 0.82 -1.3
931,447 - RPSI07_RS12175 0.82 -2.2
931,447 - RPSI07_RS12175 0.82 -2.8
931,448 + RPSI07_RS12175 0.82 +3.0
931,448 + -2.3
931,448 + RPSI07_RS12175 0.82 -0.5
931,448 + RPSI07_RS12175 0.82 +2.1
931,663 + +0.1
931,663 + -0.1
931,670 + +0.3
932,431 + RPSI07_RS12185 0.12 +2.7
932,432 - RPSI07_RS12185 0.12 +0.4
932,581 + RPSI07_RS12185 0.22 +3.0
932,581 + RPSI07_RS12185 0.22 -0.9
932,582 - RPSI07_RS12185 0.22 -0.6
932,719 + RPSI07_RS12185 0.31 +0.4
933,233 - RPSI07_RS12185 0.65 +0.4
933,233 - RPSI07_RS12185 0.65 +0.2
933,683 - +1.8
933,926 + RPSI07_RS12190 0.10 -1.2
933,926 + RPSI07_RS12190 0.10 +0.3
933,926 + RPSI07_RS12190 0.10 +1.4
933,927 - RPSI07_RS12190 0.10 -0.5
933,927 - RPSI07_RS12190 0.10 -0.9
933,927 - RPSI07_RS12190 0.10 +0.4
933,927 - RPSI07_RS12190 0.10 +0.4
933,927 - RPSI07_RS12190 0.10 +0.8
933,927 - RPSI07_RS12190 0.10 -1.0
934,154 + RPSI07_RS12190 0.33 +1.7
934,155 - RPSI07_RS12190 0.33 -2.2
934,250 + RPSI07_RS12190 0.42 -1.9
934,250 + RPSI07_RS12190 0.42 +0.2
934,250 + RPSI07_RS12190 0.42 +2.3
934,250 + RPSI07_RS12190 0.42 -0.6
934,250 + RPSI07_RS12190 0.42 -0.4
934,251 - RPSI07_RS12190 0.42 -1.5
934,251 - RPSI07_RS12190 0.42 -0.7
934,251 - RPSI07_RS12190 0.42 -1.3
934,251 - RPSI07_RS12190 0.42 -1.2
934,251 - RPSI07_RS12190 0.42 -0.0
934,437 - RPSI07_RS12190 0.60 -2.4
934,517 + RPSI07_RS12190 0.68 -2.7
934,518 - RPSI07_RS12190 0.68 -2.0

Or see this region's nucleotide sequence