Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06770

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS06760 and RPSI07_RS06765 overlap by 11 nucleotidesRPSI07_RS06765 and RPSI07_RS06770 are separated by 50 nucleotidesRPSI07_RS06770 and RPSI07_RS06775 are separated by 32 nucleotidesRPSI07_RS06775 and RPSI07_RS06780 are separated by 53 nucleotides RPSI07_RS06760: RPSI07_RS06760 - ABC transporter ATP-binding protein, at 1,813,018 to 1,813,803 _RS06760 RPSI07_RS06765: RPSI07_RS06765 - ABC transporter permease, at 1,813,793 to 1,814,689 _RS06765 RPSI07_RS06770: RPSI07_RS06770 - ABC transporter substrate-binding protein, at 1,814,740 to 1,815,792 _RS06770 RPSI07_RS06775: RPSI07_RS06775 - DUF488 domain-containing protein, at 1,815,825 to 1,816,223 _RS06775 RPSI07_RS06780: RPSI07_RS06780 - hypothetical protein, at 1,816,277 to 1,816,789 _RS06780 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1813.854 kb on - strandat 1813.923 kb on - strand, within RPSI07_RS06765at 1813.923 kb on - strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.381 kb on + strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.382 kb on - strand, within RPSI07_RS06765at 1814.402 kb on + strand, within RPSI07_RS06765at 1814.402 kb on + strand, within RPSI07_RS06765at 1814.402 kb on + strand, within RPSI07_RS06765at 1814.403 kb on - strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.543 kb on + strand, within RPSI07_RS06765at 1814.544 kb on - strand, within RPSI07_RS06765at 1814.544 kb on - strand, within RPSI07_RS06765at 1814.544 kb on - strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.549 kb on + strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.550 kb on - strand, within RPSI07_RS06765at 1814.888 kb on - strand, within RPSI07_RS06770at 1814.888 kb on - strand, within RPSI07_RS06770at 1814.888 kb on - strand, within RPSI07_RS06770at 1814.983 kb on + strand, within RPSI07_RS06770at 1814.983 kb on + strand, within RPSI07_RS06770at 1815.145 kb on + strand, within RPSI07_RS06770at 1815.146 kb on - strand, within RPSI07_RS06770at 1815.146 kb on - strand, within RPSI07_RS06770at 1815.397 kb on + strand, within RPSI07_RS06770at 1815.397 kb on + strand, within RPSI07_RS06770at 1815.479 kb on - strand, within RPSI07_RS06770at 1815.479 kb on - strand, within RPSI07_RS06770at 1815.496 kb on + strand, within RPSI07_RS06770at 1815.496 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.592 kb on + strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.593 kb on - strand, within RPSI07_RS06770at 1815.695 kb on - strandat 1815.790 kb on + strandat 1815.790 kb on + strandat 1815.790 kb on + strandat 1815.791 kb on - strandat 1815.791 kb on - strandat 1815.813 kb on - strandat 1815.813 kb on - strandat 1815.832 kb on + strandat 1815.832 kb on + strandat 1815.832 kb on + strandat 1815.832 kb on + strandat 1815.832 kb on + strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.833 kb on - strandat 1815.945 kb on + strand, within RPSI07_RS06775at 1815.945 kb on + strand, within RPSI07_RS06775at 1815.946 kb on - strand, within RPSI07_RS06775at 1816.045 kb on + strand, within RPSI07_RS06775at 1816.046 kb on - strand, within RPSI07_RS06775at 1816.046 kb on - strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.143 kb on + strand, within RPSI07_RS06775at 1816.144 kb on - strand, within RPSI07_RS06775at 1816.144 kb on - strand, within RPSI07_RS06775at 1816.144 kb on - strand, within RPSI07_RS06775at 1816.144 kb on - strand, within RPSI07_RS06775at 1816.236 kb on + strandat 1816.237 kb on - strandat 1816.237 kb on - strandat 1816.277 kb on - strandat 1816.277 kb on - strandat 1816.277 kb on - strandat 1816.310 kb on + strandat 1816.310 kb on + strandat 1816.311 kb on - strandat 1816.311 kb on - strandat 1816.311 kb on - strandat 1816.311 kb on - strandat 1816.311 kb on - strandat 1816.430 kb on + strand, within RPSI07_RS06780at 1816.430 kb on + strand, within RPSI07_RS06780at 1816.430 kb on + strand, within RPSI07_RS06780at 1816.431 kb on - strand, within RPSI07_RS06780at 1816.457 kb on + strand, within RPSI07_RS06780at 1816.457 kb on + strand, within RPSI07_RS06780at 1816.458 kb on - strand, within RPSI07_RS06780at 1816.652 kb on + strand, within RPSI07_RS06780at 1816.652 kb on + strand, within RPSI07_RS06780at 1816.653 kb on - strand, within RPSI07_RS06780at 1816.683 kb on - strand, within RPSI07_RS06780at 1816.683 kb on - strand, within RPSI07_RS06780at 1816.683 kb on - strand, within RPSI07_RS06780at 1816.697 kb on + strand, within RPSI07_RS06780

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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1,813,854 - -1.1
1,813,923 - RPSI07_RS06765 0.14 -0.8
1,813,923 - RPSI07_RS06765 0.14 -1.4
1,814,381 + RPSI07_RS06765 0.66 -0.8
1,814,381 + RPSI07_RS06765 0.66 +0.7
1,814,381 + RPSI07_RS06765 0.66 +0.5
1,814,381 + RPSI07_RS06765 0.66 -1.6
1,814,381 + RPSI07_RS06765 0.66 -1.4
1,814,381 + RPSI07_RS06765 0.66 +0.5
1,814,382 - RPSI07_RS06765 0.66 -0.0
1,814,382 - RPSI07_RS06765 0.66 +1.3
1,814,382 - RPSI07_RS06765 0.66 +0.1
1,814,382 - RPSI07_RS06765 0.66 -0.1
1,814,402 + RPSI07_RS06765 0.68 +1.3
1,814,402 + RPSI07_RS06765 0.68 +1.8
1,814,402 + RPSI07_RS06765 0.68 -0.0
1,814,403 - RPSI07_RS06765 0.68 -0.1
1,814,543 + RPSI07_RS06765 0.84 -0.4
1,814,543 + RPSI07_RS06765 0.84 -0.6
1,814,543 + RPSI07_RS06765 0.84 -0.5
1,814,543 + RPSI07_RS06765 0.84 -0.1
1,814,543 + RPSI07_RS06765 0.84 -0.3
1,814,543 + RPSI07_RS06765 0.84 +0.9
1,814,544 - RPSI07_RS06765 0.84 +2.9
1,814,544 - RPSI07_RS06765 0.84 +1.2
1,814,544 - RPSI07_RS06765 0.84 -0.5
1,814,549 + RPSI07_RS06765 0.84 -0.8
1,814,549 + RPSI07_RS06765 0.84 +0.5
1,814,549 + RPSI07_RS06765 0.84 -0.9
1,814,549 + RPSI07_RS06765 0.84 +0.9
1,814,549 + RPSI07_RS06765 0.84 -1.3
1,814,549 + RPSI07_RS06765 0.84 +0.3
1,814,549 + RPSI07_RS06765 0.84 -1.4
1,814,549 + RPSI07_RS06765 0.84 +4.1
1,814,549 + RPSI07_RS06765 0.84 -0.2
1,814,549 + RPSI07_RS06765 0.84 -1.5
1,814,549 + RPSI07_RS06765 0.84 +2.1
1,814,550 - RPSI07_RS06765 0.84 -1.0
1,814,550 - RPSI07_RS06765 0.84 -2.2
1,814,550 - RPSI07_RS06765 0.84 -1.0
1,814,550 - RPSI07_RS06765 0.84 -0.4
1,814,550 - RPSI07_RS06765 0.84 +0.3
1,814,550 - RPSI07_RS06765 0.84 +2.3
1,814,888 - RPSI07_RS06770 0.14 -0.2
1,814,888 - RPSI07_RS06770 0.14 -0.4
1,814,888 - RPSI07_RS06770 0.14 -0.1
1,814,983 + RPSI07_RS06770 0.23 +0.1
1,814,983 + RPSI07_RS06770 0.23 +0.8
1,815,145 + RPSI07_RS06770 0.38 -0.6
1,815,146 - RPSI07_RS06770 0.39 -3.0
1,815,146 - RPSI07_RS06770 0.39 -0.4
1,815,397 + RPSI07_RS06770 0.62 -0.6
1,815,397 + RPSI07_RS06770 0.62 -1.2
1,815,479 - RPSI07_RS06770 0.70 +0.4
1,815,479 - RPSI07_RS06770 0.70 -1.5
1,815,496 + RPSI07_RS06770 0.72 -0.8
1,815,496 + RPSI07_RS06770 0.72 -0.8
1,815,592 + RPSI07_RS06770 0.81 +1.8
1,815,592 + RPSI07_RS06770 0.81 +0.9
1,815,592 + RPSI07_RS06770 0.81 -1.0
1,815,592 + RPSI07_RS06770 0.81 +2.9
1,815,593 - RPSI07_RS06770 0.81 +1.3
1,815,593 - RPSI07_RS06770 0.81 -0.8
1,815,593 - RPSI07_RS06770 0.81 +1.3
1,815,593 - RPSI07_RS06770 0.81 -0.3
1,815,695 - -1.2
1,815,790 + -0.7
1,815,790 + -0.3
1,815,790 + +0.8
1,815,791 - -1.0
1,815,791 - -1.2
1,815,813 - -2.1
1,815,813 - -1.4
1,815,832 + -0.4
1,815,832 + -0.4
1,815,832 + -0.4
1,815,832 + -1.5
1,815,832 + +0.1
1,815,833 - +0.2
1,815,833 - -1.0
1,815,833 - +0.1
1,815,833 - -0.7
1,815,833 - -2.3
1,815,833 - -0.2
1,815,833 - -0.1
1,815,833 - +0.3
1,815,945 + RPSI07_RS06775 0.30 -2.2
1,815,945 + RPSI07_RS06775 0.30 -0.0
1,815,946 - RPSI07_RS06775 0.30 +1.1
1,816,045 + RPSI07_RS06775 0.55 -0.3
1,816,046 - RPSI07_RS06775 0.55 +0.3
1,816,046 - RPSI07_RS06775 0.55 -0.1
1,816,143 + RPSI07_RS06775 0.80 +0.5
1,816,143 + RPSI07_RS06775 0.80 +2.7
1,816,143 + RPSI07_RS06775 0.80 -0.5
1,816,143 + RPSI07_RS06775 0.80 +2.4
1,816,143 + RPSI07_RS06775 0.80 +0.2
1,816,143 + RPSI07_RS06775 0.80 -0.6
1,816,143 + RPSI07_RS06775 0.80 -0.2
1,816,144 - RPSI07_RS06775 0.80 +0.0
1,816,144 - RPSI07_RS06775 0.80 -0.8
1,816,144 - RPSI07_RS06775 0.80 +2.9
1,816,144 - RPSI07_RS06775 0.80 +0.9
1,816,236 + +0.3
1,816,237 - -0.1
1,816,237 - -0.5
1,816,277 - -0.8
1,816,277 - +1.7
1,816,277 - +1.5
1,816,310 + -0.7
1,816,310 + +0.4
1,816,311 - -0.7
1,816,311 - +0.3
1,816,311 - -3.3
1,816,311 - -1.1
1,816,311 - +1.9
1,816,430 + RPSI07_RS06780 0.30 -0.7
1,816,430 + RPSI07_RS06780 0.30 -1.6
1,816,430 + RPSI07_RS06780 0.30 +0.2
1,816,431 - RPSI07_RS06780 0.30 +0.8
1,816,457 + RPSI07_RS06780 0.35 +0.2
1,816,457 + RPSI07_RS06780 0.35 +1.8
1,816,458 - RPSI07_RS06780 0.35 +0.6
1,816,652 + RPSI07_RS06780 0.73 -0.2
1,816,652 + RPSI07_RS06780 0.73 +0.2
1,816,653 - RPSI07_RS06780 0.73 +0.6
1,816,683 - RPSI07_RS06780 0.79 -1.0
1,816,683 - RPSI07_RS06780 0.79 -0.7
1,816,683 - RPSI07_RS06780 0.79 +0.1
1,816,697 + RPSI07_RS06780 0.82 +0.1

Or see this region's nucleotide sequence