Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS05255

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS05250 and RPSI07_RS05255 are separated by 273 nucleotidesRPSI07_RS05255 and RPSI07_RS05260 are separated by 132 nucleotides RPSI07_RS05250: RPSI07_RS05250 - amino acid ABC transporter substrate-binding protein, at 1,438,833 to 1,439,723 _RS05250 RPSI07_RS05255: RPSI07_RS05255 - DNA-binding response regulator, at 1,439,997 to 1,440,524 _RS05255 RPSI07_RS05260: RPSI07_RS05260 - LuxR family transcriptional regulator, at 1,440,657 to 1,441,697 _RS05260 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1439.041 kb on + strand, within RPSI07_RS05250at 1439.042 kb on - strand, within RPSI07_RS05250at 1439.350 kb on + strand, within RPSI07_RS05250at 1439.350 kb on + strand, within RPSI07_RS05250at 1439.350 kb on + strand, within RPSI07_RS05250at 1439.396 kb on + strand, within RPSI07_RS05250at 1439.473 kb on + strand, within RPSI07_RS05250at 1439.473 kb on + strand, within RPSI07_RS05250at 1439.548 kb on + strand, within RPSI07_RS05250at 1439.548 kb on + strand, within RPSI07_RS05250at 1439.548 kb on + strand, within RPSI07_RS05250at 1439.549 kb on - strand, within RPSI07_RS05250at 1439.578 kb on + strand, within RPSI07_RS05250at 1439.579 kb on - strand, within RPSI07_RS05250at 1439.579 kb on - strand, within RPSI07_RS05250at 1439.766 kb on - strandat 1439.766 kb on - strandat 1439.766 kb on - strandat 1439.795 kb on + strandat 1439.795 kb on + strandat 1440.034 kb on + strandat 1440.034 kb on + strandat 1440.034 kb on + strandat 1440.034 kb on + strandat 1440.034 kb on + strandat 1440.034 kb on + strandat 1440.035 kb on - strandat 1440.035 kb on - strandat 1440.092 kb on + strand, within RPSI07_RS05255at 1440.092 kb on + strand, within RPSI07_RS05255at 1440.093 kb on - strand, within RPSI07_RS05255at 1440.093 kb on - strand, within RPSI07_RS05255at 1440.093 kb on - strand, within RPSI07_RS05255at 1440.094 kb on - strand, within RPSI07_RS05255at 1440.119 kb on + strand, within RPSI07_RS05255at 1440.120 kb on - strand, within RPSI07_RS05255at 1440.120 kb on - strand, within RPSI07_RS05255at 1440.120 kb on - strand, within RPSI07_RS05255at 1440.120 kb on - strand, within RPSI07_RS05255at 1440.329 kb on + strand, within RPSI07_RS05255at 1440.330 kb on - strand, within RPSI07_RS05255at 1440.330 kb on - strand, within RPSI07_RS05255at 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.527 kb on + strandat 1440.528 kb on - strandat 1440.528 kb on - strandat 1440.528 kb on - strandat 1440.528 kb on - strandat 1440.528 kb on - strandat 1440.528 kb on - strandat 1440.531 kb on + strandat 1440.531 kb on + strandat 1440.531 kb on + strandat 1440.531 kb on + strandat 1440.531 kb on + strandat 1440.532 kb on - strandat 1440.532 kb on - strandat 1440.532 kb on - strandat 1440.532 kb on - strandat 1440.532 kb on - strandat 1440.532 kb on - strandat 1440.537 kb on + strandat 1440.537 kb on + strandat 1440.537 kb on + strandat 1440.537 kb on + strandat 1440.537 kb on + strandat 1440.538 kb on - strandat 1440.538 kb on - strandat 1440.538 kb on - strandat 1440.538 kb on - strandat 1440.558 kb on + strandat 1440.559 kb on - strandat 1440.588 kb on - strandat 1440.600 kb on - strandat 1440.775 kb on + strand, within RPSI07_RS05260at 1440.775 kb on + strand, within RPSI07_RS05260at 1440.776 kb on - strand, within RPSI07_RS05260at 1440.776 kb on - strand, within RPSI07_RS05260at 1440.899 kb on + strand, within RPSI07_RS05260at 1441.318 kb on + strand, within RPSI07_RS05260at 1441.318 kb on + strand, within RPSI07_RS05260at 1441.318 kb on + strand, within RPSI07_RS05260at 1441.318 kb on + strand, within RPSI07_RS05260at 1441.319 kb on - strand, within RPSI07_RS05260at 1441.319 kb on - strand, within RPSI07_RS05260at 1441.319 kb on - strand, within RPSI07_RS05260at 1441.319 kb on - strand, within RPSI07_RS05260at 1441.319 kb on - strand, within RPSI07_RS05260at 1441.319 kb on - strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.322 kb on + strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.323 kb on - strand, within RPSI07_RS05260at 1441.336 kb on + strand, within RPSI07_RS05260at 1441.337 kb on - strand, within RPSI07_RS05260at 1441.337 kb on - strand, within RPSI07_RS05260at 1441.370 kb on - strand, within RPSI07_RS05260at 1441.370 kb on - strand, within RPSI07_RS05260at 1441.481 kb on - strand, within RPSI07_RS05260

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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1,439,041 + RPSI07_RS05250 0.23 +0.6
1,439,042 - RPSI07_RS05250 0.23 +0.3
1,439,350 + RPSI07_RS05250 0.58 +0.2
1,439,350 + RPSI07_RS05250 0.58 -2.3
1,439,350 + RPSI07_RS05250 0.58 +2.0
1,439,396 + RPSI07_RS05250 0.63 +1.3
1,439,473 + RPSI07_RS05250 0.72 +1.4
1,439,473 + RPSI07_RS05250 0.72 -1.4
1,439,548 + RPSI07_RS05250 0.80 +1.3
1,439,548 + RPSI07_RS05250 0.80 +3.3
1,439,548 + RPSI07_RS05250 0.80 -0.9
1,439,549 - RPSI07_RS05250 0.80 -1.0
1,439,578 + RPSI07_RS05250 0.84 -0.1
1,439,579 - RPSI07_RS05250 0.84 -1.2
1,439,579 - RPSI07_RS05250 0.84 +1.0
1,439,766 - -1.1
1,439,766 - +0.5
1,439,766 - -1.1
1,439,795 + +2.3
1,439,795 + +0.2
1,440,034 + -2.0
1,440,034 + +0.0
1,440,034 + +0.1
1,440,034 + +0.5
1,440,034 + +0.9
1,440,034 + +0.5
1,440,035 - -0.5
1,440,035 - +1.1
1,440,092 + RPSI07_RS05255 0.18 -1.5
1,440,092 + RPSI07_RS05255 0.18 -0.9
1,440,093 - RPSI07_RS05255 0.18 +0.3
1,440,093 - RPSI07_RS05255 0.18 -1.7
1,440,093 - RPSI07_RS05255 0.18 -2.3
1,440,094 - RPSI07_RS05255 0.18 +0.3
1,440,119 + RPSI07_RS05255 0.23 -0.6
1,440,120 - RPSI07_RS05255 0.23 -1.5
1,440,120 - RPSI07_RS05255 0.23 +0.0
1,440,120 - RPSI07_RS05255 0.23 +0.7
1,440,120 - RPSI07_RS05255 0.23 -0.7
1,440,329 + RPSI07_RS05255 0.63 -0.4
1,440,330 - RPSI07_RS05255 0.63 +3.2
1,440,330 - RPSI07_RS05255 0.63 -0.8
1,440,527 + +0.2
1,440,527 + +0.5
1,440,527 + +1.3
1,440,527 + +0.9
1,440,527 + -0.3
1,440,527 + +0.0
1,440,527 + -0.0
1,440,527 + +1.9
1,440,527 + -1.2
1,440,527 + +0.1
1,440,527 + -0.2
1,440,528 - -1.0
1,440,528 - +0.8
1,440,528 - -1.5
1,440,528 - +0.1
1,440,528 - -0.5
1,440,528 - -0.6
1,440,531 + -0.4
1,440,531 + -1.1
1,440,531 + +0.2
1,440,531 + +1.0
1,440,531 + -0.4
1,440,532 - +0.3
1,440,532 - +0.7
1,440,532 - -0.3
1,440,532 - -0.3
1,440,532 - +0.2
1,440,532 - +2.3
1,440,537 + -0.6
1,440,537 + +0.1
1,440,537 + -0.7
1,440,537 + -0.1
1,440,537 + -0.4
1,440,538 - +0.3
1,440,538 - -0.1
1,440,538 - +0.1
1,440,538 - +0.9
1,440,558 + -0.3
1,440,559 - +2.0
1,440,588 - -1.1
1,440,600 - +0.5
1,440,775 + RPSI07_RS05260 0.11 -0.7
1,440,775 + RPSI07_RS05260 0.11 -0.7
1,440,776 - RPSI07_RS05260 0.11 +0.7
1,440,776 - RPSI07_RS05260 0.11 -0.0
1,440,899 + RPSI07_RS05260 0.23 -0.4
1,441,318 + RPSI07_RS05260 0.63 -1.7
1,441,318 + RPSI07_RS05260 0.63 -0.7
1,441,318 + RPSI07_RS05260 0.63 -1.9
1,441,318 + RPSI07_RS05260 0.63 -0.1
1,441,319 - RPSI07_RS05260 0.64 +0.4
1,441,319 - RPSI07_RS05260 0.64 +0.5
1,441,319 - RPSI07_RS05260 0.64 -1.0
1,441,319 - RPSI07_RS05260 0.64 -1.3
1,441,319 - RPSI07_RS05260 0.64 +0.7
1,441,319 - RPSI07_RS05260 0.64 -0.1
1,441,322 + RPSI07_RS05260 0.64 +0.4
1,441,322 + RPSI07_RS05260 0.64 +0.7
1,441,322 + RPSI07_RS05260 0.64 -2.3
1,441,322 + RPSI07_RS05260 0.64 +0.3
1,441,322 + RPSI07_RS05260 0.64 +1.3
1,441,322 + RPSI07_RS05260 0.64 -1.8
1,441,322 + RPSI07_RS05260 0.64 -0.7
1,441,322 + RPSI07_RS05260 0.64 -0.5
1,441,322 + RPSI07_RS05260 0.64 -0.7
1,441,322 + RPSI07_RS05260 0.64 -1.4
1,441,323 - RPSI07_RS05260 0.64 -1.5
1,441,323 - RPSI07_RS05260 0.64 +3.3
1,441,323 - RPSI07_RS05260 0.64 -1.1
1,441,323 - RPSI07_RS05260 0.64 -0.4
1,441,323 - RPSI07_RS05260 0.64 +0.1
1,441,323 - RPSI07_RS05260 0.64 -0.3
1,441,323 - RPSI07_RS05260 0.64 -0.3
1,441,323 - RPSI07_RS05260 0.64 +1.3
1,441,323 - RPSI07_RS05260 0.64 +0.2
1,441,323 - RPSI07_RS05260 0.64 +0.4
1,441,336 + RPSI07_RS05260 0.65 -0.0
1,441,337 - RPSI07_RS05260 0.65 +2.3
1,441,337 - RPSI07_RS05260 0.65 -1.9
1,441,370 - RPSI07_RS05260 0.68 -1.1
1,441,370 - RPSI07_RS05260 0.68 -0.9
1,441,481 - RPSI07_RS05260 0.79 +0.5

Or see this region's nucleotide sequence