Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS02645

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02635 and RPSI07_RS02640 are separated by 282 nucleotidesRPSI07_RS02640 and RPSI07_RS02645 are separated by 11 nucleotidesRPSI07_RS02645 and RPSI07_RS02650 are separated by 69 nucleotides RPSI07_RS02635: RPSI07_RS02635 - RNA ligase RtcB family protein, at 746,378 to 747,514 _RS02635 RPSI07_RS02640: RPSI07_RS02640 - DUF2783 domain-containing protein, at 747,797 to 748,003 _RS02640 RPSI07_RS02645: RPSI07_RS02645 - FAD-dependent oxidoreductase, at 748,015 to 749,694 _RS02645 RPSI07_RS02650: RPSI07_RS02650 - MBL fold metallo-hydrolase, at 749,764 to 750,723 _RS02650 Position (kb) 748 749 750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 747.072 kb on + strand, within RPSI07_RS02635at 747.072 kb on + strand, within RPSI07_RS02635at 747.073 kb on - strand, within RPSI07_RS02635at 747.073 kb on - strand, within RPSI07_RS02635at 747.138 kb on + strand, within RPSI07_RS02635at 747.138 kb on + strand, within RPSI07_RS02635at 747.139 kb on - strand, within RPSI07_RS02635at 747.139 kb on - strand, within RPSI07_RS02635at 747.139 kb on - strand, within RPSI07_RS02635at 747.139 kb on - strand, within RPSI07_RS02635at 747.139 kb on - strand, within RPSI07_RS02635at 747.170 kb on - strand, within RPSI07_RS02635at 747.525 kb on + strandat 747.592 kb on + strandat 747.670 kb on + strandat 747.671 kb on - strandat 747.704 kb on + strandat 747.705 kb on - strandat 747.705 kb on - strandat 747.707 kb on + strandat 747.707 kb on + strandat 747.707 kb on + strandat 747.707 kb on + strandat 747.708 kb on - strandat 747.708 kb on - strandat 747.708 kb on - strandat 747.708 kb on - strandat 747.708 kb on - strandat 747.779 kb on + strandat 747.869 kb on - strand, within RPSI07_RS02640at 747.869 kb on - strand, within RPSI07_RS02640at 747.870 kb on - strand, within RPSI07_RS02640at 747.958 kb on - strand, within RPSI07_RS02640at 748.148 kb on + strandat 748.148 kb on + strandat 748.148 kb on + strandat 748.148 kb on + strandat 748.149 kb on - strandat 748.149 kb on - strandat 748.149 kb on - strandat 748.149 kb on - strandat 748.149 kb on - strandat 748.640 kb on + strand, within RPSI07_RS02645at 748.640 kb on + strand, within RPSI07_RS02645at 748.640 kb on + strand, within RPSI07_RS02645at 748.641 kb on - strand, within RPSI07_RS02645at 748.641 kb on - strand, within RPSI07_RS02645at 748.828 kb on - strand, within RPSI07_RS02645at 748.828 kb on - strand, within RPSI07_RS02645at 748.829 kb on + strand, within RPSI07_RS02645at 748.829 kb on + strand, within RPSI07_RS02645at 748.829 kb on + strand, within RPSI07_RS02645at 748.829 kb on + strand, within RPSI07_RS02645at 748.830 kb on - strand, within RPSI07_RS02645at 748.830 kb on - strand, within RPSI07_RS02645at 748.830 kb on - strand, within RPSI07_RS02645at 749.159 kb on + strand, within RPSI07_RS02645at 749.159 kb on + strand, within RPSI07_RS02645at 749.159 kb on + strand, within RPSI07_RS02645at 749.178 kb on - strand, within RPSI07_RS02645at 749.309 kb on + strand, within RPSI07_RS02645at 749.309 kb on + strand, within RPSI07_RS02645at 749.309 kb on + strand, within RPSI07_RS02645at 749.309 kb on + strand, within RPSI07_RS02645at 749.309 kb on + strand, within RPSI07_RS02645at 749.309 kb on + strand, within RPSI07_RS02645at 749.310 kb on - strand, within RPSI07_RS02645at 749.310 kb on - strand, within RPSI07_RS02645at 749.310 kb on - strand, within RPSI07_RS02645at 749.312 kb on + strand, within RPSI07_RS02645at 749.312 kb on + strand, within RPSI07_RS02645at 749.312 kb on + strand, within RPSI07_RS02645at 749.313 kb on - strand, within RPSI07_RS02645at 749.314 kb on - strand, within RPSI07_RS02645at 749.376 kb on - strand, within RPSI07_RS02645at 749.376 kb on - strand, within RPSI07_RS02645at 749.660 kb on + strandat 749.661 kb on - strandat 749.682 kb on - strandat 749.846 kb on + strandat 749.882 kb on + strand, within RPSI07_RS02650at 749.882 kb on + strand, within RPSI07_RS02650at 749.882 kb on + strand, within RPSI07_RS02650at 749.883 kb on - strand, within RPSI07_RS02650at 749.883 kb on - strand, within RPSI07_RS02650at 750.143 kb on + strand, within RPSI07_RS02650at 750.144 kb on - strand, within RPSI07_RS02650at 750.158 kb on + strand, within RPSI07_RS02650at 750.407 kb on + strand, within RPSI07_RS02650at 750.407 kb on + strand, within RPSI07_RS02650at 750.407 kb on + strand, within RPSI07_RS02650at 750.408 kb on - strand, within RPSI07_RS02650at 750.453 kb on - strand, within RPSI07_RS02650at 750.485 kb on + strand, within RPSI07_RS02650at 750.486 kb on - strand, within RPSI07_RS02650at 750.641 kb on + strandat 750.641 kb on + strandat 750.641 kb on + strandat 750.641 kb on + strandat 750.641 kb on + strandat 750.641 kb on + strandat 750.641 kb on + strandat 750.642 kb on - strandat 750.642 kb on - strandat 750.642 kb on - strandat 750.642 kb on - strandat 750.642 kb on - strandat 750.642 kb on - strandat 750.647 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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747,072 + RPSI07_RS02635 0.61 -3.2
747,072 + RPSI07_RS02635 0.61 -1.2
747,073 - RPSI07_RS02635 0.61 -1.6
747,073 - RPSI07_RS02635 0.61 -0.9
747,138 + RPSI07_RS02635 0.67 -3.3
747,138 + RPSI07_RS02635 0.67 +1.9
747,139 - RPSI07_RS02635 0.67 -0.8
747,139 - RPSI07_RS02635 0.67 +0.4
747,139 - RPSI07_RS02635 0.67 -0.2
747,139 - RPSI07_RS02635 0.67 -0.9
747,139 - RPSI07_RS02635 0.67 -1.4
747,170 - RPSI07_RS02635 0.70 +0.3
747,525 + +0.2
747,592 + -2.2
747,670 + +0.1
747,671 - -0.1
747,704 + +0.2
747,705 - +2.0
747,705 - -1.4
747,707 + +1.2
747,707 + -1.4
747,707 + -0.4
747,707 + +1.8
747,708 - +0.5
747,708 - +1.0
747,708 - -1.7
747,708 - -1.4
747,708 - +1.2
747,779 + -0.4
747,869 - RPSI07_RS02640 0.35 -2.4
747,869 - RPSI07_RS02640 0.35 +0.9
747,870 - RPSI07_RS02640 0.35 +0.6
747,958 - RPSI07_RS02640 0.78 +0.4
748,148 + -0.2
748,148 + +1.2
748,148 + +0.1
748,148 + +1.2
748,149 - -0.8
748,149 - -0.5
748,149 - -0.5
748,149 - -1.0
748,149 - -1.8
748,640 + RPSI07_RS02645 0.37 -0.1
748,640 + RPSI07_RS02645 0.37 -1.0
748,640 + RPSI07_RS02645 0.37 -1.4
748,641 - RPSI07_RS02645 0.37 +1.2
748,641 - RPSI07_RS02645 0.37 +0.9
748,828 - RPSI07_RS02645 0.48 +0.2
748,828 - RPSI07_RS02645 0.48 -0.8
748,829 + RPSI07_RS02645 0.48 -0.7
748,829 + RPSI07_RS02645 0.48 +1.2
748,829 + RPSI07_RS02645 0.48 +0.5
748,829 + RPSI07_RS02645 0.48 +2.0
748,830 - RPSI07_RS02645 0.49 -1.0
748,830 - RPSI07_RS02645 0.49 +3.0
748,830 - RPSI07_RS02645 0.49 -3.2
749,159 + RPSI07_RS02645 0.68 +1.3
749,159 + RPSI07_RS02645 0.68 -0.1
749,159 + RPSI07_RS02645 0.68 +0.9
749,178 - RPSI07_RS02645 0.69 +0.2
749,309 + RPSI07_RS02645 0.77 +1.2
749,309 + RPSI07_RS02645 0.77 -0.0
749,309 + RPSI07_RS02645 0.77 +0.5
749,309 + RPSI07_RS02645 0.77 +2.2
749,309 + RPSI07_RS02645 0.77 -1.8
749,309 + RPSI07_RS02645 0.77 +2.8
749,310 - RPSI07_RS02645 0.77 -0.7
749,310 - RPSI07_RS02645 0.77 +1.6
749,310 - RPSI07_RS02645 0.77 -0.3
749,312 + RPSI07_RS02645 0.77 -1.1
749,312 + RPSI07_RS02645 0.77 +0.8
749,312 + RPSI07_RS02645 0.77 +0.7
749,313 - RPSI07_RS02645 0.77 -1.9
749,314 - RPSI07_RS02645 0.77 +0.2
749,376 - RPSI07_RS02645 0.81 -2.1
749,376 - RPSI07_RS02645 0.81 +0.8
749,660 + +1.2
749,661 - +0.4
749,682 - +1.1
749,846 + -1.1
749,882 + RPSI07_RS02650 0.12 -0.7
749,882 + RPSI07_RS02650 0.12 -0.8
749,882 + RPSI07_RS02650 0.12 +2.6
749,883 - RPSI07_RS02650 0.12 -0.8
749,883 - RPSI07_RS02650 0.12 -0.3
750,143 + RPSI07_RS02650 0.39 -2.0
750,144 - RPSI07_RS02650 0.40 -0.1
750,158 + RPSI07_RS02650 0.41 -0.2
750,407 + RPSI07_RS02650 0.67 -1.4
750,407 + RPSI07_RS02650 0.67 -0.2
750,407 + RPSI07_RS02650 0.67 -0.1
750,408 - RPSI07_RS02650 0.67 -0.1
750,453 - RPSI07_RS02650 0.72 +0.1
750,485 + RPSI07_RS02650 0.75 -1.5
750,486 - RPSI07_RS02650 0.75 +1.2
750,641 + -1.5
750,641 + +1.8
750,641 + -0.1
750,641 + +2.2
750,641 + -0.8
750,641 + +0.1
750,641 + -0.9
750,642 - +3.2
750,642 - -0.7
750,642 - -1.8
750,642 - +1.2
750,642 - +0.3
750,642 - +1.2
750,647 + -1.6

Or see this region's nucleotide sequence