Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS02545

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02535 and RPSI07_RS02540 overlap by 1 nucleotidesRPSI07_RS02540 and RPSI07_RS02545 are separated by 76 nucleotidesRPSI07_RS02545 and RPSI07_RS02550 are separated by 114 nucleotides RPSI07_RS02535: RPSI07_RS02535 - DUF4810 domain-containing protein, at 724,764 to 725,129 _RS02535 RPSI07_RS02540: RPSI07_RS02540 - hypothetical protein, at 725,129 to 725,800 _RS02540 RPSI07_RS02545: RPSI07_RS02545 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 725,877 to 728,207 _RS02545 RPSI07_RS02550: RPSI07_RS02550 - LysR family transcriptional regulator, at 728,322 to 729,236 _RS02550 Position (kb) 725 726 727 728 729Strain fitness (log2 ratio) -2 -1 0 1 2 3at 724.884 kb on + strand, within RPSI07_RS02535at 724.884 kb on + strand, within RPSI07_RS02535at 724.891 kb on - strand, within RPSI07_RS02535at 724.891 kb on - strand, within RPSI07_RS02535at 724.984 kb on - strandat 725.007 kb on + strand, within RPSI07_RS02535at 725.008 kb on - strand, within RPSI07_RS02535at 725.085 kb on + strand, within RPSI07_RS02535at 725.086 kb on - strand, within RPSI07_RS02535at 725.086 kb on - strand, within RPSI07_RS02535at 725.086 kb on - strand, within RPSI07_RS02535at 725.086 kb on - strand, within RPSI07_RS02535at 725.217 kb on - strand, within RPSI07_RS02540at 725.297 kb on + strand, within RPSI07_RS02540at 725.298 kb on - strand, within RPSI07_RS02540at 725.298 kb on - strand, within RPSI07_RS02540at 725.298 kb on - strand, within RPSI07_RS02540at 725.298 kb on - strand, within RPSI07_RS02540at 725.343 kb on - strand, within RPSI07_RS02540at 725.345 kb on + strand, within RPSI07_RS02540at 725.345 kb on + strand, within RPSI07_RS02540at 725.345 kb on + strand, within RPSI07_RS02540at 725.346 kb on - strand, within RPSI07_RS02540at 725.346 kb on - strand, within RPSI07_RS02540at 725.346 kb on - strand, within RPSI07_RS02540at 725.346 kb on - strand, within RPSI07_RS02540at 725.468 kb on + strand, within RPSI07_RS02540at 725.468 kb on + strand, within RPSI07_RS02540at 725.468 kb on + strand, within RPSI07_RS02540at 725.468 kb on + strand, within RPSI07_RS02540at 725.469 kb on - strand, within RPSI07_RS02540at 725.486 kb on + strand, within RPSI07_RS02540at 725.487 kb on - strand, within RPSI07_RS02540at 725.498 kb on + strand, within RPSI07_RS02540at 725.498 kb on + strand, within RPSI07_RS02540at 725.498 kb on + strand, within RPSI07_RS02540at 725.498 kb on + strand, within RPSI07_RS02540at 725.498 kb on + strand, within RPSI07_RS02540at 725.498 kb on + strand, within RPSI07_RS02540at 725.499 kb on - strand, within RPSI07_RS02540at 725.499 kb on - strand, within RPSI07_RS02540at 725.499 kb on - strand, within RPSI07_RS02540at 725.499 kb on - strand, within RPSI07_RS02540at 725.702 kb on + strand, within RPSI07_RS02540at 725.702 kb on + strand, within RPSI07_RS02540at 725.703 kb on - strand, within RPSI07_RS02540at 725.766 kb on - strandat 725.766 kb on - strandat 725.786 kb on + strandat 725.786 kb on + strandat 725.788 kb on - strandat 726.125 kb on - strand, within RPSI07_RS02545at 726.125 kb on - strand, within RPSI07_RS02545at 726.125 kb on - strand, within RPSI07_RS02545at 726.265 kb on + strand, within RPSI07_RS02545at 726.265 kb on + strand, within RPSI07_RS02545at 726.265 kb on + strand, within RPSI07_RS02545at 726.266 kb on - strand, within RPSI07_RS02545at 726.266 kb on - strand, within RPSI07_RS02545at 726.580 kb on + strand, within RPSI07_RS02545at 726.580 kb on + strand, within RPSI07_RS02545at 726.616 kb on + strand, within RPSI07_RS02545at 726.617 kb on - strand, within RPSI07_RS02545at 726.617 kb on - strand, within RPSI07_RS02545at 726.617 kb on - strand, within RPSI07_RS02545at 726.617 kb on - strand, within RPSI07_RS02545at 726.628 kb on + strand, within RPSI07_RS02545at 726.628 kb on + strand, within RPSI07_RS02545at 726.629 kb on - strand, within RPSI07_RS02545at 726.629 kb on - strand, within RPSI07_RS02545at 726.629 kb on - strand, within RPSI07_RS02545at 726.629 kb on - strand, within RPSI07_RS02545at 726.659 kb on + strand, within RPSI07_RS02545at 726.661 kb on + strand, within RPSI07_RS02545at 726.662 kb on - strand, within RPSI07_RS02545at 726.662 kb on - strand, within RPSI07_RS02545at 726.662 kb on - strand, within RPSI07_RS02545at 726.662 kb on - strand, within RPSI07_RS02545at 726.718 kb on + strand, within RPSI07_RS02545at 726.718 kb on + strand, within RPSI07_RS02545at 726.718 kb on + strand, within RPSI07_RS02545at 726.719 kb on - strand, within RPSI07_RS02545at 726.826 kb on + strand, within RPSI07_RS02545at 726.827 kb on - strand, within RPSI07_RS02545at 726.827 kb on - strand, within RPSI07_RS02545at 726.827 kb on - strand, within RPSI07_RS02545at 726.856 kb on + strand, within RPSI07_RS02545at 726.856 kb on + strand, within RPSI07_RS02545at 726.856 kb on + strand, within RPSI07_RS02545at 726.856 kb on + strand, within RPSI07_RS02545at 726.856 kb on + strand, within RPSI07_RS02545at 726.857 kb on - strand, within RPSI07_RS02545at 726.857 kb on - strand, within RPSI07_RS02545at 727.489 kb on + strand, within RPSI07_RS02545at 727.489 kb on + strand, within RPSI07_RS02545at 727.490 kb on - strand, within RPSI07_RS02545at 727.490 kb on - strand, within RPSI07_RS02545at 727.537 kb on + strand, within RPSI07_RS02545at 727.537 kb on + strand, within RPSI07_RS02545at 727.651 kb on + strand, within RPSI07_RS02545at 727.651 kb on + strandat 727.651 kb on + strand, within RPSI07_RS02545at 727.652 kb on - strand, within RPSI07_RS02545at 727.849 kb on + strand, within RPSI07_RS02545at 727.850 kb on - strand, within RPSI07_RS02545at 727.850 kb on - strand, within RPSI07_RS02545at 727.850 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 727.856 kb on - strand, within RPSI07_RS02545at 728.193 kb on - strandat 728.196 kb on + strandat 728.250 kb on + strandat 728.451 kb on + strand, within RPSI07_RS02550at 728.451 kb on + strand, within RPSI07_RS02550at 728.905 kb on - strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.063 kb on + strand, within RPSI07_RS02550at 729.064 kb on - strand, within RPSI07_RS02550at 729.064 kb on - strand, within RPSI07_RS02550at 729.064 kb on - strand, within RPSI07_RS02550at 729.072 kb on + strand, within RPSI07_RS02550at 729.072 kb on + strand, within RPSI07_RS02550at 729.072 kb on + strand, within RPSI07_RS02550at 729.073 kb on - strand, within RPSI07_RS02550at 729.078 kb on + strand, within RPSI07_RS02550at 729.078 kb on + strand, within RPSI07_RS02550at 729.079 kb on - strand, within RPSI07_RS02550at 729.079 kb on - strand, within RPSI07_RS02550at 729.079 kb on - strand, within RPSI07_RS02550at 729.079 kb on - strand, within RPSI07_RS02550at 729.079 kb on - strand, within RPSI07_RS02550at 729.126 kb on + strand, within RPSI07_RS02550at 729.126 kb on + strand, within RPSI07_RS02550at 729.126 kb on + strand, within RPSI07_RS02550at 729.126 kb on + strand, within RPSI07_RS02550at 729.127 kb on - strand, within RPSI07_RS02550at 729.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
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724,884 + RPSI07_RS02535 0.33 +0.7
724,884 + RPSI07_RS02535 0.33 -0.1
724,891 - RPSI07_RS02535 0.35 +0.6
724,891 - RPSI07_RS02535 0.35 +0.4
724,984 - -1.1
725,007 + RPSI07_RS02535 0.66 +0.4
725,008 - RPSI07_RS02535 0.67 -0.9
725,085 + RPSI07_RS02535 0.88 +0.8
725,086 - RPSI07_RS02535 0.88 +0.6
725,086 - RPSI07_RS02535 0.88 -1.1
725,086 - RPSI07_RS02535 0.88 +0.5
725,086 - RPSI07_RS02535 0.88 +1.8
725,217 - RPSI07_RS02540 0.13 -0.4
725,297 + RPSI07_RS02540 0.25 +0.2
725,298 - RPSI07_RS02540 0.25 -0.9
725,298 - RPSI07_RS02540 0.25 +1.7
725,298 - RPSI07_RS02540 0.25 +0.4
725,298 - RPSI07_RS02540 0.25 -0.2
725,343 - RPSI07_RS02540 0.32 +0.3
725,345 + RPSI07_RS02540 0.32 +0.9
725,345 + RPSI07_RS02540 0.32 -1.1
725,345 + RPSI07_RS02540 0.32 -0.0
725,346 - RPSI07_RS02540 0.32 +0.6
725,346 - RPSI07_RS02540 0.32 +0.0
725,346 - RPSI07_RS02540 0.32 -0.8
725,346 - RPSI07_RS02540 0.32 +1.0
725,468 + RPSI07_RS02540 0.50 +0.9
725,468 + RPSI07_RS02540 0.50 -0.2
725,468 + RPSI07_RS02540 0.50 +1.2
725,468 + RPSI07_RS02540 0.50 +3.3
725,469 - RPSI07_RS02540 0.51 +0.9
725,486 + RPSI07_RS02540 0.53 -0.4
725,487 - RPSI07_RS02540 0.53 +0.2
725,498 + RPSI07_RS02540 0.55 +1.1
725,498 + RPSI07_RS02540 0.55 +1.4
725,498 + RPSI07_RS02540 0.55 +0.4
725,498 + RPSI07_RS02540 0.55 -0.1
725,498 + RPSI07_RS02540 0.55 -1.5
725,498 + RPSI07_RS02540 0.55 +1.2
725,499 - RPSI07_RS02540 0.55 -0.4
725,499 - RPSI07_RS02540 0.55 -0.1
725,499 - RPSI07_RS02540 0.55 +0.3
725,499 - RPSI07_RS02540 0.55 -0.3
725,702 + RPSI07_RS02540 0.85 +0.1
725,702 + RPSI07_RS02540 0.85 +0.6
725,703 - RPSI07_RS02540 0.85 +0.9
725,766 - +1.2
725,766 - +1.2
725,786 + +1.4
725,786 + +0.4
725,788 - -0.2
726,125 - RPSI07_RS02545 0.11 +0.6
726,125 - RPSI07_RS02545 0.11 -0.9
726,125 - RPSI07_RS02545 0.11 +0.5
726,265 + RPSI07_RS02545 0.17 -0.4
726,265 + RPSI07_RS02545 0.17 -0.5
726,265 + RPSI07_RS02545 0.17 -2.5
726,266 - RPSI07_RS02545 0.17 +0.7
726,266 - RPSI07_RS02545 0.17 +1.6
726,580 + RPSI07_RS02545 0.30 -0.5
726,580 + RPSI07_RS02545 0.30 +0.9
726,616 + RPSI07_RS02545 0.32 +0.2
726,617 - RPSI07_RS02545 0.32 +0.9
726,617 - RPSI07_RS02545 0.32 +1.3
726,617 - RPSI07_RS02545 0.32 +0.0
726,617 - RPSI07_RS02545 0.32 +0.6
726,628 + RPSI07_RS02545 0.32 +0.1
726,628 + RPSI07_RS02545 0.32 -0.6
726,629 - RPSI07_RS02545 0.32 -1.6
726,629 - RPSI07_RS02545 0.32 -0.9
726,629 - RPSI07_RS02545 0.32 -0.1
726,629 - RPSI07_RS02545 0.32 -1.4
726,659 + RPSI07_RS02545 0.34 +0.4
726,661 + RPSI07_RS02545 0.34 +1.0
726,662 - RPSI07_RS02545 0.34 +0.4
726,662 - RPSI07_RS02545 0.34 +0.2
726,662 - RPSI07_RS02545 0.34 -0.1
726,662 - RPSI07_RS02545 0.34 +0.5
726,718 + RPSI07_RS02545 0.36 -1.2
726,718 + RPSI07_RS02545 0.36 +0.6
726,718 + RPSI07_RS02545 0.36 +0.6
726,719 - RPSI07_RS02545 0.36 -1.0
726,826 + RPSI07_RS02545 0.41 +0.2
726,827 - RPSI07_RS02545 0.41 +0.2
726,827 - RPSI07_RS02545 0.41 -0.2
726,827 - RPSI07_RS02545 0.41 -0.7
726,856 + RPSI07_RS02545 0.42 -0.7
726,856 + RPSI07_RS02545 0.42 -1.1
726,856 + RPSI07_RS02545 0.42 +0.2
726,856 + RPSI07_RS02545 0.42 -0.6
726,856 + RPSI07_RS02545 0.42 -0.2
726,857 - RPSI07_RS02545 0.42 -1.6
726,857 - RPSI07_RS02545 0.42 -0.9
727,489 + RPSI07_RS02545 0.69 +0.1
727,489 + RPSI07_RS02545 0.69 +0.9
727,490 - RPSI07_RS02545 0.69 -0.4
727,490 - RPSI07_RS02545 0.69 +2.2
727,537 + RPSI07_RS02545 0.71 -0.8
727,537 + RPSI07_RS02545 0.71 +0.8
727,651 + RPSI07_RS02545 0.76 -0.1
727,651 + -1.1
727,651 + RPSI07_RS02545 0.76 +1.2
727,652 - RPSI07_RS02545 0.76 +0.2
727,849 + RPSI07_RS02545 0.85 +0.1
727,850 - RPSI07_RS02545 0.85 +0.3
727,850 - RPSI07_RS02545 0.85 +1.2
727,850 - RPSI07_RS02545 0.85 +0.0
727,856 - RPSI07_RS02545 0.85 +1.3
727,856 - RPSI07_RS02545 0.85 -0.6
727,856 - RPSI07_RS02545 0.85 -1.7
727,856 - RPSI07_RS02545 0.85 +0.4
727,856 - RPSI07_RS02545 0.85 -0.2
727,856 - RPSI07_RS02545 0.85 +0.2
727,856 - RPSI07_RS02545 0.85 -0.0
728,193 - -0.5
728,196 + +0.2
728,250 + -0.2
728,451 + RPSI07_RS02550 0.14 -1.9
728,451 + RPSI07_RS02550 0.14 +0.2
728,905 - RPSI07_RS02550 0.64 -1.4
729,063 + RPSI07_RS02550 0.81 +0.3
729,063 + RPSI07_RS02550 0.81 +1.8
729,063 + RPSI07_RS02550 0.81 +0.1
729,063 + RPSI07_RS02550 0.81 -0.8
729,063 + RPSI07_RS02550 0.81 -0.4
729,063 + RPSI07_RS02550 0.81 -0.2
729,063 + RPSI07_RS02550 0.81 +0.0
729,064 - RPSI07_RS02550 0.81 +0.0
729,064 - RPSI07_RS02550 0.81 -1.1
729,064 - RPSI07_RS02550 0.81 +0.6
729,072 + RPSI07_RS02550 0.82 -0.5
729,072 + RPSI07_RS02550 0.82 -2.1
729,072 + RPSI07_RS02550 0.82 -1.2
729,073 - RPSI07_RS02550 0.82 +1.7
729,078 + RPSI07_RS02550 0.83 -0.4
729,078 + RPSI07_RS02550 0.83 +2.1
729,079 - RPSI07_RS02550 0.83 -1.9
729,079 - RPSI07_RS02550 0.83 -0.4
729,079 - RPSI07_RS02550 0.83 +0.1
729,079 - RPSI07_RS02550 0.83 -0.6
729,079 - RPSI07_RS02550 0.83 -1.2
729,126 + RPSI07_RS02550 0.88 -0.4
729,126 + RPSI07_RS02550 0.88 -1.3
729,126 + RPSI07_RS02550 0.88 +0.6
729,126 + RPSI07_RS02550 0.88 -0.9
729,127 - RPSI07_RS02550 0.88 -0.2
729,148 - +1.3

Or see this region's nucleotide sequence