Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS10550

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS10545 and RPSI07_RS10550 are separated by 72 nucleotidesRPSI07_RS10550 and RPSI07_RS10555 are separated by 85 nucleotidesRPSI07_RS10555 and RPSI07_RS10560 are separated by 2 nucleotides RPSI07_RS10545: RPSI07_RS10545 - gamma-glutamyltransferase family protein, at 567,457 to 569,325 _RS10545 RPSI07_RS10550: RPSI07_RS10550 - TonB-dependent siderophore receptor, at 569,398 to 571,803 _RS10550 RPSI07_RS10555: RPSI07_RS10555 - FecR family protein, at 571,889 to 572,713 _RS10555 RPSI07_RS10560: RPSI07_RS10560 - RNA polymerase sigma factor, at 572,716 to 573,273 _RS10560 Position (kb) 569 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.588 kb on + strand, within RPSI07_RS10545at 568.589 kb on - strand, within RPSI07_RS10545at 568.645 kb on + strand, within RPSI07_RS10545at 568.646 kb on - strand, within RPSI07_RS10545at 569.044 kb on + strand, within RPSI07_RS10545at 569.045 kb on - strand, within RPSI07_RS10545at 569.444 kb on + strandat 569.445 kb on + strandat 569.445 kb on - strandat 569.445 kb on - strandat 569.445 kb on - strandat 569.465 kb on + strandat 569.541 kb on - strandat 569.541 kb on - strandat 569.673 kb on - strand, within RPSI07_RS10550at 569.673 kb on - strand, within RPSI07_RS10550at 569.673 kb on - strand, within RPSI07_RS10550at 569.771 kb on + strand, within RPSI07_RS10550at 569.771 kb on + strand, within RPSI07_RS10550at 569.771 kb on + strand, within RPSI07_RS10550at 569.772 kb on - strand, within RPSI07_RS10550at 569.772 kb on - strand, within RPSI07_RS10550at 569.777 kb on + strand, within RPSI07_RS10550at 569.777 kb on + strand, within RPSI07_RS10550at 569.778 kb on - strand, within RPSI07_RS10550at 570.066 kb on - strand, within RPSI07_RS10550at 570.080 kb on + strand, within RPSI07_RS10550at 570.092 kb on + strand, within RPSI07_RS10550at 570.092 kb on + strand, within RPSI07_RS10550at 570.093 kb on - strand, within RPSI07_RS10550at 570.093 kb on - strand, within RPSI07_RS10550at 570.242 kb on + strand, within RPSI07_RS10550at 570.338 kb on + strand, within RPSI07_RS10550at 570.399 kb on - strand, within RPSI07_RS10550at 570.482 kb on + strand, within RPSI07_RS10550at 570.482 kb on + strand, within RPSI07_RS10550at 570.482 kb on + strand, within RPSI07_RS10550at 570.483 kb on - strand, within RPSI07_RS10550at 570.498 kb on + strand, within RPSI07_RS10550at 570.556 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.557 kb on + strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.558 kb on - strand, within RPSI07_RS10550at 570.590 kb on + strand, within RPSI07_RS10550at 570.590 kb on + strand, within RPSI07_RS10550at 570.591 kb on - strand, within RPSI07_RS10550at 570.645 kb on - strand, within RPSI07_RS10550at 570.645 kb on - strand, within RPSI07_RS10550at 570.645 kb on - strand, within RPSI07_RS10550at 570.645 kb on - strand, within RPSI07_RS10550at 570.791 kb on + strand, within RPSI07_RS10550at 570.792 kb on - strand, within RPSI07_RS10550at 570.792 kb on - strand, within RPSI07_RS10550at 571.076 kb on + strand, within RPSI07_RS10550at 571.076 kb on + strand, within RPSI07_RS10550at 571.077 kb on - strand, within RPSI07_RS10550at 571.077 kb on - strand, within RPSI07_RS10550at 571.077 kb on - strand, within RPSI07_RS10550at 571.184 kb on + strand, within RPSI07_RS10550at 571.185 kb on - strand, within RPSI07_RS10550at 571.217 kb on + strand, within RPSI07_RS10550at 571.218 kb on - strand, within RPSI07_RS10550at 571.218 kb on - strand, within RPSI07_RS10550at 571.244 kb on + strand, within RPSI07_RS10550at 571.263 kb on + strand, within RPSI07_RS10550at 571.264 kb on - strand, within RPSI07_RS10550at 571.397 kb on + strand, within RPSI07_RS10550at 571.398 kb on - strand, within RPSI07_RS10550at 571.398 kb on - strand, within RPSI07_RS10550at 571.572 kb on - strandat 571.828 kb on + strandat 571.828 kb on + strandat 571.843 kb on + strandat 571.843 kb on + strandat 571.843 kb on + strandat 571.869 kb on + strandat 571.870 kb on - strandat 571.870 kb on - strandat 572.518 kb on - strand, within RPSI07_RS10555at 572.518 kb on - strand, within RPSI07_RS10555

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
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568,588 + RPSI07_RS10545 0.61 +1.4
568,588 + RPSI07_RS10545 0.61 -1.9
568,588 + RPSI07_RS10545 0.61 -2.0
568,588 + RPSI07_RS10545 0.61 +0.4
568,588 + RPSI07_RS10545 0.61 -1.2
568,589 - RPSI07_RS10545 0.61 -0.4
568,645 + RPSI07_RS10545 0.64 -2.6
568,646 - RPSI07_RS10545 0.64 -0.4
569,044 + RPSI07_RS10545 0.85 -0.6
569,045 - RPSI07_RS10545 0.85 -0.6
569,444 + -0.4
569,445 + -0.6
569,445 - -1.9
569,445 - +0.8
569,445 - -0.6
569,465 + +0.5
569,541 - +0.4
569,541 - -1.0
569,673 - RPSI07_RS10550 0.11 +1.4
569,673 - RPSI07_RS10550 0.11 -1.4
569,673 - RPSI07_RS10550 0.11 +0.7
569,771 + RPSI07_RS10550 0.16 -0.7
569,771 + RPSI07_RS10550 0.16 -0.4
569,771 + RPSI07_RS10550 0.16 +3.1
569,772 - RPSI07_RS10550 0.16 +1.0
569,772 - RPSI07_RS10550 0.16 -2.3
569,777 + RPSI07_RS10550 0.16 -1.3
569,777 + RPSI07_RS10550 0.16 -1.0
569,778 - RPSI07_RS10550 0.16 -1.3
570,066 - RPSI07_RS10550 0.28 -0.2
570,080 + RPSI07_RS10550 0.28 +1.2
570,092 + RPSI07_RS10550 0.29 -0.8
570,092 + RPSI07_RS10550 0.29 -1.6
570,093 - RPSI07_RS10550 0.29 +0.6
570,093 - RPSI07_RS10550 0.29 +1.0
570,242 + RPSI07_RS10550 0.35 +0.9
570,338 + RPSI07_RS10550 0.39 +1.5
570,399 - RPSI07_RS10550 0.42 +0.3
570,482 + RPSI07_RS10550 0.45 +1.5
570,482 + RPSI07_RS10550 0.45 +0.4
570,482 + RPSI07_RS10550 0.45 -0.4
570,483 - RPSI07_RS10550 0.45 -0.1
570,498 + RPSI07_RS10550 0.46 +1.6
570,556 + RPSI07_RS10550 0.48 +1.4
570,557 + RPSI07_RS10550 0.48 +1.3
570,557 + RPSI07_RS10550 0.48 -0.1
570,557 + RPSI07_RS10550 0.48 -1.7
570,557 + RPSI07_RS10550 0.48 +0.8
570,557 + RPSI07_RS10550 0.48 -1.0
570,557 + RPSI07_RS10550 0.48 +3.0
570,557 + RPSI07_RS10550 0.48 +1.1
570,557 + RPSI07_RS10550 0.48 +1.4
570,557 + RPSI07_RS10550 0.48 -0.8
570,558 - RPSI07_RS10550 0.48 -0.4
570,558 - RPSI07_RS10550 0.48 +0.2
570,558 - RPSI07_RS10550 0.48 -0.1
570,558 - RPSI07_RS10550 0.48 -2.2
570,558 - RPSI07_RS10550 0.48 +0.6
570,558 - RPSI07_RS10550 0.48 -0.7
570,558 - RPSI07_RS10550 0.48 -0.8
570,590 + RPSI07_RS10550 0.50 +0.4
570,590 + RPSI07_RS10550 0.50 +0.2
570,591 - RPSI07_RS10550 0.50 +0.4
570,645 - RPSI07_RS10550 0.52 -0.1
570,645 - RPSI07_RS10550 0.52 +0.5
570,645 - RPSI07_RS10550 0.52 -0.2
570,645 - RPSI07_RS10550 0.52 -0.2
570,791 + RPSI07_RS10550 0.58 +1.6
570,792 - RPSI07_RS10550 0.58 +0.6
570,792 - RPSI07_RS10550 0.58 +1.0
571,076 + RPSI07_RS10550 0.70 -1.5
571,076 + RPSI07_RS10550 0.70 -0.2
571,077 - RPSI07_RS10550 0.70 -0.4
571,077 - RPSI07_RS10550 0.70 +1.9
571,077 - RPSI07_RS10550 0.70 -0.4
571,184 + RPSI07_RS10550 0.74 -1.3
571,185 - RPSI07_RS10550 0.74 +1.3
571,217 + RPSI07_RS10550 0.76 -0.4
571,218 - RPSI07_RS10550 0.76 +0.4
571,218 - RPSI07_RS10550 0.76 -0.6
571,244 + RPSI07_RS10550 0.77 -0.2
571,263 + RPSI07_RS10550 0.78 +0.4
571,264 - RPSI07_RS10550 0.78 +0.9
571,397 + RPSI07_RS10550 0.83 +1.9
571,398 - RPSI07_RS10550 0.83 -0.5
571,398 - RPSI07_RS10550 0.83 +1.0
571,572 - +0.3
571,828 + -0.3
571,828 + -1.5
571,843 + -1.2
571,843 + -1.1
571,843 + -0.2
571,869 + +3.8
571,870 - +1.8
571,870 - +1.8
572,518 - RPSI07_RS10555 0.76 -2.3
572,518 - RPSI07_RS10555 0.76 -0.6

Or see this region's nucleotide sequence