Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS16970

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS16965 and RPSI07_RS16970 overlap by 26 nucleotidesRPSI07_RS16970 and RPSI07_RS16975 are separated by 125 nucleotides RPSI07_RS16965: RPSI07_RS16965 - glutamine-hydrolyzing GMP synthase, at 2,008,644 to 2,010,263 _RS16965 RPSI07_RS16970: RPSI07_RS16970 - hypothetical protein, at 2,010,238 to 2,010,813 _RS16970 RPSI07_RS16975: RPSI07_RS16975 - IMP dehydrogenase, at 2,010,939 to 2,012,402 _RS16975 Position (kb) 2010 2011Strain fitness (log2 ratio) -1 0 1at 2010.333 kb on - strand, within RPSI07_RS16970at 2010.333 kb on - strand, within RPSI07_RS16970at 2010.333 kb on - strand, within RPSI07_RS16970at 2010.333 kb on - strand, within RPSI07_RS16970at 2010.681 kb on - strand, within RPSI07_RS16970at 2010.897 kb on - strandat 2010.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
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2,010,333 - RPSI07_RS16970 0.16 -1.3
2,010,333 - RPSI07_RS16970 0.16 +1.5
2,010,333 - RPSI07_RS16970 0.16 -0.3
2,010,333 - RPSI07_RS16970 0.16 -0.8
2,010,681 - RPSI07_RS16970 0.77 -1.3
2,010,897 - -0.3
2,010,897 - -0.7

Or see this region's nucleotide sequence