Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS15435

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
1,626,419	+		RPSI07_RS15430	0.36	-1.3
1,626,419	+		RPSI07_RS15430	0.36	-1.0
1,626,419	+		RPSI07_RS15430	0.36	-0.3
1,626,419	+		RPSI07_RS15430	0.36	-0.1
1,626,419	+		RPSI07_RS15430	0.36	-0.3
1,626,419	+		RPSI07_RS15430	0.36	-1.1
1,626,419	+		RPSI07_RS15430	0.36	-0.1
1,626,420	-		RPSI07_RS15430	0.36	-1.9
1,626,420	-		RPSI07_RS15430	0.36	-0.2
1,626,473	+		RPSI07_RS15430	0.41	-1.9
1,626,509	+		RPSI07_RS15430	0.45	-1.2
1,626,509	+		RPSI07_RS15430	0.45	-0.4
1,626,510	-		RPSI07_RS15430	0.45	+1.5
1,626,510	-		RPSI07_RS15430	0.45	-1.8
1,626,611	+		RPSI07_RS15430	0.55	-1.8
1,626,611	+		RPSI07_RS15430	0.55	+0.1
1,626,612	-		RPSI07_RS15430	0.55	-1.1
1,626,612	-		RPSI07_RS15430	0.55	-1.8
1,626,612	-		RPSI07_RS15430	0.55	-4.1
1,626,612	-		RPSI07_RS15430	0.55	-1.1
1,626,612	-		RPSI07_RS15430	0.55	+2.6
1,626,627	+		RPSI07_RS15430	0.56	-0.3
1,626,627	+		RPSI07_RS15430	0.56	-1.2
1,626,627	+		RPSI07_RS15430	0.56	-0.4
1,626,667	+		RPSI07_RS15430	0.60	-0.1
1,626,667	+		RPSI07_RS15430	0.60	+0.2
1,626,667	+		RPSI07_RS15430	0.60	+0.7
1,626,667	+		RPSI07_RS15430	0.60	+0.2
1,626,667	+		RPSI07_RS15430	0.60	+0.9
1,626,668	-		RPSI07_RS15430	0.60	-0.1
1,626,668	-		RPSI07_RS15430	0.60	-1.8
1,626,671	+		RPSI07_RS15430	0.60	+1.5
1,626,671	+				+2.5
1,626,672	-		RPSI07_RS15430	0.60	+1.8
1,626,672	-		RPSI07_RS15430	0.60	-0.4
1,626,672	-		RPSI07_RS15430	0.60	+1.5
1,626,672	-		RPSI07_RS15430	0.60	+0.4
1,626,673	-		RPSI07_RS15430	0.60	+2.3
1,626,674	+		RPSI07_RS15430	0.61	-0.2
1,626,728	+		RPSI07_RS15430	0.66	+1.8
1,626,729	-		RPSI07_RS15430	0.66	+1.5
1,626,729	-		RPSI07_RS15430	0.66	-1.3
1,626,729	-		RPSI07_RS15430	0.66	-1.6
1,626,752	+		RPSI07_RS15430	0.68	-0.7
1,626,761	+		RPSI07_RS15430	0.69	-1.6
1,626,761	+		RPSI07_RS15430	0.69	-0.2
1,626,762	-		RPSI07_RS15430	0.69	+1.5
1,626,809	+		RPSI07_RS15430	0.73	+0.9
1,626,809	+		RPSI07_RS15430	0.73	-1.4
1,626,810	-		RPSI07_RS15430	0.74	+1.5
1,626,810	-		RPSI07_RS15430	0.74	-0.7
1,626,824	+		RPSI07_RS15430	0.75	-0.5
1,626,825	-		RPSI07_RS15430	0.75	-0.5
1,626,825	-		RPSI07_RS15430	0.75	+0.4
1,626,862	+		RPSI07_RS15430	0.78	+2.1
1,626,863	-		RPSI07_RS15430	0.79	+0.1
1,626,866	+		RPSI07_RS15430	0.79	+4.7
1,626,866	+		RPSI07_RS15430	0.79	-0.5
1,626,866	+		RPSI07_RS15430	0.79	+1.1
1,626,867	-		RPSI07_RS15430	0.79	-0.5
1,626,867	-		RPSI07_RS15430	0.79	+1.5
1,626,867	-		RPSI07_RS15430	0.79	-0.6
1,626,867	-		RPSI07_RS15430	0.79	-0.1
1,626,867	-		RPSI07_RS15430	0.79	-0.4
1,626,929	+		RPSI07_RS15430	0.85	+0.3
1,626,929	+		RPSI07_RS15430	0.85	-0.4
1,626,956	+		RPSI07_RS15430	0.87	-0.4
1,626,956	+		RPSI07_RS15430	0.87	+1.1
1,626,956	+		RPSI07_RS15430	0.87	+0.7
1,626,957	-		RPSI07_RS15430	0.88	-0.2
1,626,957	-		RPSI07_RS15430	0.88	+0.2
1,626,957	-		RPSI07_RS15430	0.88	+1.5
1,626,957	-		RPSI07_RS15430	0.88	-1.5
1,626,957	-		RPSI07_RS15430	0.88	+0.5
1,626,957	-		RPSI07_RS15430	0.88	-0.0
1,626,971	+		RPSI07_RS15430	0.89	-0.8
1,627,166	+				-0.2
1,627,167	-				+0.4
1,627,271	+				-0.5
1,627,272	-				+3.3
1,627,272	-				-0.5
1,627,272	-				+0.3
1,627,272	-				-0.5
1,627,292	-				+1.5
1,627,292	-				-0.9
1,627,426	+				+1.6
1,627,427	-				+2.1
1,627,448	+		RPSI07_RS15435	0.10	-1.6
1,627,448	+		RPSI07_RS15435	0.10	+1.5
1,627,448	+		RPSI07_RS15435	0.10	-1.1
1,627,448	+		RPSI07_RS15435	0.10	-0.6
1,627,449	-		RPSI07_RS15435	0.10	-0.5
1,627,449	-		RPSI07_RS15435	0.10	+1.5
1,627,449	-		RPSI07_RS15435	0.10	+1.5
1,627,520	+		RPSI07_RS15435	0.19	-0.1
1,627,521	-		RPSI07_RS15435	0.19	-0.5
1,627,521	-		RPSI07_RS15435	0.19	-0.1
1,627,685	+		RPSI07_RS15435	0.38	+1.8
1,627,686	-		RPSI07_RS15435	0.39	-0.3
1,627,686	-		RPSI07_RS15435	0.39	-1.6
1,627,729	-		RPSI07_RS15435	0.44	-1.2
1,627,772	+		RPSI07_RS15435	0.49	-0.9
1,627,773	-		RPSI07_RS15435	0.49	+1.4
1,627,859	+		RPSI07_RS15435	0.59	+0.7
1,627,860	-		RPSI07_RS15435	0.59	-0.5
1,627,860	-		RPSI07_RS15435	0.59	+2.7
1,627,934	+		RPSI07_RS15435	0.68	-0.5
1,627,935	-		RPSI07_RS15435	0.68	+1.3
1,628,114	+				-0.1
1,628,145	+				-0.8
1,628,195	+				-0.6
1,628,195	+				-0.8
1,628,318	-				+0.4
1,628,318	-				-0.5
1,628,353	+				+1.8
1,628,353	+				-0.5
1,628,354	-				+0.3
1,628,366	-		RPSI07_RS15440	0.12	+0.2
1,628,379	-		RPSI07_RS15440	0.15	-1.9
1,628,461	+		RPSI07_RS15440	0.35	-1.3
1,628,462	-		RPSI07_RS15440	0.35	-1.3
1,628,462	-		RPSI07_RS15440	0.35	+0.7
1,628,590	+		RPSI07_RS15440	0.66	+0.5
1,628,591	-		RPSI07_RS15440	0.66	+1.7
1,628,591	-		RPSI07_RS15440	0.66	-0.1
1,628,591	-		RPSI07_RS15440	0.66	+0.1
1,628,591	-		RPSI07_RS15440	0.66	+0.6
1,628,591	-		RPSI07_RS15440	0.66	-1.6
1,628,591	-		RPSI07_RS15440	0.66	-0.3
1,628,713	+				-0.7
1,628,713	+				+2.5
1,628,714	-				-1.5
1,628,742	+				+0.4
1,628,743	-				-0.7
1,628,743	-				-0.2
1,628,743	-				-2.3
1,628,750	+				-1.6
1,628,750	+				+2.5
1,628,750	+				-1.2
1,628,750	+				-0.6
1,628,751	-				+3.1
1,628,751	-				-2.1
1,628,751	-				-2.0
1,628,751	-				-0.9
1,628,751	-				-2.1
1,628,781	+				+0.2
1,628,796	+				+0.5
1,628,797	-				-1.2
1,628,797	-				-0.7
1,628,797	-				+1.3
1,628,797	-				-0.7
1,628,922	+				-0.4
1,628,923	-				+0.5
1,628,923	-				-0.5
1,629,028	+				+1.0
1,629,057	+				+1.5
1,629,126	+		RPSI07_RS15445	0.17	-1.6
1,629,126	+		RPSI07_RS15445	0.17	+0.0
1,629,146	+		RPSI07_RS15445	0.19	-1.2
1,629,146	+		RPSI07_RS15445	0.19	-0.1
1,629,146	+		RPSI07_RS15445	0.19	-0.4
1,629,147	-		RPSI07_RS15445	0.19	-1.0
1,629,147	-		RPSI07_RS15445	0.19	-0.0
1,629,147	-		RPSI07_RS15445	0.19	-1.7
1,629,147	-		RPSI07_RS15445	0.19	-1.1
1,629,147	-		RPSI07_RS15445	0.19	-2.4
1,629,147	-		RPSI07_RS15445	0.19	-0.9
1,629,147	-		RPSI07_RS15445	0.19	-1.1
1,629,147	-		RPSI07_RS15445	0.19	+0.4
1,629,147	-		RPSI07_RS15445	0.19	-1.0
1,629,147	-		RPSI07_RS15445	0.19	+0.6
1,629,158	+		RPSI07_RS15445	0.20	+0.9
1,629,159	-		RPSI07_RS15445	0.20	-1.1
1,629,159	-		RPSI07_RS15445	0.20	+0.1