Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS10860

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS10855 and RPSI07_RS10860 are separated by 13 nucleotidesRPSI07_RS10860 and RPSI07_RS10865 are separated by 57 nucleotides RPSI07_RS10855: RPSI07_RS10855 - ABC transporter ATP-binding protein, at 632,293 to 633,357 _RS10855 RPSI07_RS10860: RPSI07_RS10860 - acetylornithine deacetylase, at 633,371 to 634,570 _RS10860 RPSI07_RS10865: RPSI07_RS10865 - ABC transporter permease, at 634,628 to 635,785 _RS10865 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 632.693 kb on - strand, within RPSI07_RS10855at 632.785 kb on + strand, within RPSI07_RS10855at 632.786 kb on - strand, within RPSI07_RS10855at 632.786 kb on - strand, within RPSI07_RS10855at 633.010 kb on + strand, within RPSI07_RS10855at 633.010 kb on + strand, within RPSI07_RS10855at 633.010 kb on + strand, within RPSI07_RS10855at 633.010 kb on + strand, within RPSI07_RS10855at 633.010 kb on + strand, within RPSI07_RS10855at 633.011 kb on - strand, within RPSI07_RS10855at 633.073 kb on + strand, within RPSI07_RS10855at 633.074 kb on - strand, within RPSI07_RS10855at 633.074 kb on - strand, within RPSI07_RS10855at 633.074 kb on - strand, within RPSI07_RS10855at 633.074 kb on - strand, within RPSI07_RS10855at 633.137 kb on - strand, within RPSI07_RS10855at 633.165 kb on + strand, within RPSI07_RS10855at 633.166 kb on - strand, within RPSI07_RS10855at 633.190 kb on + strand, within RPSI07_RS10855at 633.190 kb on + strand, within RPSI07_RS10855at 633.191 kb on - strand, within RPSI07_RS10855at 633.191 kb on - strand, within RPSI07_RS10855at 633.191 kb on - strand, within RPSI07_RS10855at 633.265 kb on + strandat 633.320 kb on + strandat 633.320 kb on + strandat 633.356 kb on - strandat 633.362 kb on + strandat 633.362 kb on + strandat 633.363 kb on - strandat 633.364 kb on + strandat 633.364 kb on + strandat 633.364 kb on + strandat 633.365 kb on - strandat 633.536 kb on + strand, within RPSI07_RS10860at 633.536 kb on + strand, within RPSI07_RS10860at 633.537 kb on + strand, within RPSI07_RS10860at 633.537 kb on - strand, within RPSI07_RS10860at 633.537 kb on - strand, within RPSI07_RS10860at 633.801 kb on - strand, within RPSI07_RS10860at 633.938 kb on + strand, within RPSI07_RS10860at 633.938 kb on + strand, within RPSI07_RS10860at 633.939 kb on - strand, within RPSI07_RS10860at 633.939 kb on - strand, within RPSI07_RS10860at 634.229 kb on + strand, within RPSI07_RS10860at 634.230 kb on - strand, within RPSI07_RS10860at 634.465 kb on + strandat 634.494 kb on - strandat 634.568 kb on + strandat 634.825 kb on + strand, within RPSI07_RS10865at 634.827 kb on + strand, within RPSI07_RS10865at 634.827 kb on + strand, within RPSI07_RS10865at 634.827 kb on + strand, within RPSI07_RS10865at 634.827 kb on + strand, within RPSI07_RS10865at 634.827 kb on + strand, within RPSI07_RS10865at 634.828 kb on - strand, within RPSI07_RS10865at 634.845 kb on + strand, within RPSI07_RS10865at 634.887 kb on + strand, within RPSI07_RS10865at 634.923 kb on + strand, within RPSI07_RS10865at 635.010 kb on + strand, within RPSI07_RS10865at 635.011 kb on - strand, within RPSI07_RS10865at 635.011 kb on - strand, within RPSI07_RS10865at 635.011 kb on - strand, within RPSI07_RS10865at 635.011 kb on - strand, within RPSI07_RS10865at 635.012 kb on + strand, within RPSI07_RS10865at 635.025 kb on + strand, within RPSI07_RS10865at 635.025 kb on + strand, within RPSI07_RS10865at 635.026 kb on - strand, within RPSI07_RS10865at 635.253 kb on + strand, within RPSI07_RS10865at 635.254 kb on - strand, within RPSI07_RS10865at 635.254 kb on - strand, within RPSI07_RS10865at 635.254 kb on - strand, within RPSI07_RS10865at 635.254 kb on - strand, within RPSI07_RS10865at 635.322 kb on + strand, within RPSI07_RS10865at 635.322 kb on + strand, within RPSI07_RS10865at 635.385 kb on + strand, within RPSI07_RS10865at 635.402 kb on + strand, within RPSI07_RS10865at 635.457 kb on + strand, within RPSI07_RS10865at 635.458 kb on - strand, within RPSI07_RS10865

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
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632,693 - RPSI07_RS10855 0.38 -1.3
632,785 + RPSI07_RS10855 0.46 +0.7
632,786 - RPSI07_RS10855 0.46 +0.9
632,786 - RPSI07_RS10855 0.46 +1.7
633,010 + RPSI07_RS10855 0.67 -0.9
633,010 + RPSI07_RS10855 0.67 +0.2
633,010 + RPSI07_RS10855 0.67 -0.2
633,010 + RPSI07_RS10855 0.67 +1.8
633,010 + RPSI07_RS10855 0.67 +1.7
633,011 - RPSI07_RS10855 0.67 +0.4
633,073 + RPSI07_RS10855 0.73 +1.3
633,074 - RPSI07_RS10855 0.73 -0.3
633,074 - RPSI07_RS10855 0.73 -0.9
633,074 - RPSI07_RS10855 0.73 -1.0
633,074 - RPSI07_RS10855 0.73 -0.8
633,137 - RPSI07_RS10855 0.79 -1.5
633,165 + RPSI07_RS10855 0.82 +3.0
633,166 - RPSI07_RS10855 0.82 -0.6
633,190 + RPSI07_RS10855 0.84 +0.3
633,190 + RPSI07_RS10855 0.84 -0.5
633,191 - RPSI07_RS10855 0.84 +4.0
633,191 - RPSI07_RS10855 0.84 +0.0
633,191 - RPSI07_RS10855 0.84 +1.1
633,265 + +1.8
633,320 + -0.7
633,320 + -0.4
633,356 - +0.1
633,362 + +0.8
633,362 + -0.5
633,363 - -0.7
633,364 + -0.3
633,364 + +0.4
633,364 + +2.0
633,365 - +0.3
633,536 + RPSI07_RS10860 0.14 -0.0
633,536 + RPSI07_RS10860 0.14 +1.7
633,537 + RPSI07_RS10860 0.14 -1.2
633,537 - RPSI07_RS10860 0.14 -0.2
633,537 - RPSI07_RS10860 0.14 -1.4
633,801 - RPSI07_RS10860 0.36 -1.1
633,938 + RPSI07_RS10860 0.47 +0.0
633,938 + RPSI07_RS10860 0.47 -0.5
633,939 - RPSI07_RS10860 0.47 +3.8
633,939 - RPSI07_RS10860 0.47 +3.2
634,229 + RPSI07_RS10860 0.71 -1.7
634,230 - RPSI07_RS10860 0.72 +0.1
634,465 + +0.1
634,494 - -0.8
634,568 + -0.8
634,825 + RPSI07_RS10865 0.17 -0.6
634,827 + RPSI07_RS10865 0.17 -0.2
634,827 + RPSI07_RS10865 0.17 -0.9
634,827 + RPSI07_RS10865 0.17 +0.3
634,827 + RPSI07_RS10865 0.17 -1.3
634,827 + RPSI07_RS10865 0.17 -0.5
634,828 - RPSI07_RS10865 0.17 -0.2
634,845 + RPSI07_RS10865 0.19 -0.7
634,887 + RPSI07_RS10865 0.22 +0.4
634,923 + RPSI07_RS10865 0.25 +0.3
635,010 + RPSI07_RS10865 0.33 +1.7
635,011 - RPSI07_RS10865 0.33 +0.1
635,011 - RPSI07_RS10865 0.33 -0.8
635,011 - RPSI07_RS10865 0.33 +0.4
635,011 - RPSI07_RS10865 0.33 -1.3
635,012 + RPSI07_RS10865 0.33 +1.7
635,025 + RPSI07_RS10865 0.34 -0.4
635,025 + RPSI07_RS10865 0.34 +0.4
635,026 - RPSI07_RS10865 0.34 -1.4
635,253 + RPSI07_RS10865 0.54 -1.7
635,254 - RPSI07_RS10865 0.54 -0.3
635,254 - RPSI07_RS10865 0.54 +0.1
635,254 - RPSI07_RS10865 0.54 -0.8
635,254 - RPSI07_RS10865 0.54 +0.3
635,322 + RPSI07_RS10865 0.60 +0.1
635,322 + RPSI07_RS10865 0.60 -0.2
635,385 + RPSI07_RS10865 0.65 -0.9
635,402 + RPSI07_RS10865 0.67 -2.0
635,457 + RPSI07_RS10865 0.72 -0.1
635,458 - RPSI07_RS10865 0.72 +0.8

Or see this region's nucleotide sequence