Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03360

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03355 and RPSI07_RS03360 overlap by 4 nucleotidesRPSI07_RS03360 and RPSI07_RS03365 overlap by 4 nucleotides RPSI07_RS03355: RPSI07_RS03355 - TonB-dependent receptor, at 913,446 to 915,404 _RS03355 RPSI07_RS03360: RPSI07_RS03360 - DUF4154 domain-containing protein, at 915,401 to 915,961 _RS03360 RPSI07_RS03365: RPSI07_RS03365 - GGDEF-domain containing protein, at 915,958 to 917,949 _RS03365 Position (kb) 915 916Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 914.471 kb on + strand, within RPSI07_RS03355at 914.471 kb on + strand, within RPSI07_RS03355at 914.471 kb on + strand, within RPSI07_RS03355at 914.471 kb on + strand, within RPSI07_RS03355at 914.472 kb on - strand, within RPSI07_RS03355at 914.550 kb on + strand, within RPSI07_RS03355at 914.550 kb on + strand, within RPSI07_RS03355at 914.551 kb on - strand, within RPSI07_RS03355at 914.551 kb on - strand, within RPSI07_RS03355at 914.589 kb on + strand, within RPSI07_RS03355at 914.646 kb on + strand, within RPSI07_RS03355at 914.646 kb on + strand, within RPSI07_RS03355at 914.646 kb on + strand, within RPSI07_RS03355at 914.736 kb on + strand, within RPSI07_RS03355at 914.736 kb on + strand, within RPSI07_RS03355at 914.736 kb on + strand, within RPSI07_RS03355at 914.736 kb on + strand, within RPSI07_RS03355at 914.737 kb on - strand, within RPSI07_RS03355at 914.766 kb on + strand, within RPSI07_RS03355at 914.767 kb on - strand, within RPSI07_RS03355at 914.775 kb on + strand, within RPSI07_RS03355at 914.775 kb on + strand, within RPSI07_RS03355at 914.775 kb on + strand, within RPSI07_RS03355at 914.775 kb on + strand, within RPSI07_RS03355at 914.776 kb on - strand, within RPSI07_RS03355at 914.778 kb on + strand, within RPSI07_RS03355at 914.778 kb on + strand, within RPSI07_RS03355at 914.778 kb on + strand, within RPSI07_RS03355at 914.779 kb on - strand, within RPSI07_RS03355at 914.779 kb on - strand, within RPSI07_RS03355at 914.779 kb on - strand, within RPSI07_RS03355at 914.901 kb on + strand, within RPSI07_RS03355at 914.902 kb on - strand, within RPSI07_RS03355at 914.902 kb on - strand, within RPSI07_RS03355at 915.051 kb on + strand, within RPSI07_RS03355at 915.051 kb on + strand, within RPSI07_RS03355at 915.051 kb on + strand, within RPSI07_RS03355at 915.051 kb on + strand, within RPSI07_RS03355at 915.052 kb on - strand, within RPSI07_RS03355at 915.180 kb on + strand, within RPSI07_RS03355at 915.180 kb on + strand, within RPSI07_RS03355at 915.181 kb on - strand, within RPSI07_RS03355at 915.181 kb on - strand, within RPSI07_RS03355at 915.292 kb on - strandat 915.313 kb on - strandat 915.392 kb on + strandat 915.392 kb on + strandat 915.393 kb on - strandat 915.393 kb on - strandat 915.393 kb on - strandat 915.393 kb on - strandat 915.393 kb on - strandat 915.393 kb on - strandat 915.393 kb on - strandat 915.557 kb on + strand, within RPSI07_RS03360at 915.558 kb on - strand, within RPSI07_RS03360at 915.558 kb on - strand, within RPSI07_RS03360at 915.558 kb on - strand, within RPSI07_RS03360at 916.264 kb on + strand, within RPSI07_RS03365at 916.264 kb on + strand, within RPSI07_RS03365at 916.265 kb on - strand, within RPSI07_RS03365at 916.391 kb on - strand, within RPSI07_RS03365at 916.391 kb on - strand, within RPSI07_RS03365at 916.391 kb on - strand, within RPSI07_RS03365at 916.391 kb on - strand, within RPSI07_RS03365at 916.423 kb on + strand, within RPSI07_RS03365at 916.424 kb on - strand, within RPSI07_RS03365at 916.424 kb on - strand, within RPSI07_RS03365at 916.489 kb on + strand, within RPSI07_RS03365at 916.939 kb on + strand, within RPSI07_RS03365at 916.939 kb on + strand, within RPSI07_RS03365at 916.939 kb on + strand, within RPSI07_RS03365at 916.939 kb on + strand, within RPSI07_RS03365at 916.939 kb on + strand, within RPSI07_RS03365at 916.940 kb on - strand, within RPSI07_RS03365at 916.940 kb on - strand, within RPSI07_RS03365at 916.940 kb on - strand, within RPSI07_RS03365at 916.940 kb on - strand, within RPSI07_RS03365

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
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914,471 + RPSI07_RS03355 0.52 -0.5
914,471 + RPSI07_RS03355 0.52 -0.4
914,471 + RPSI07_RS03355 0.52 +1.3
914,471 + RPSI07_RS03355 0.52 -1.7
914,472 - RPSI07_RS03355 0.52 +0.7
914,550 + RPSI07_RS03355 0.56 -0.3
914,550 + RPSI07_RS03355 0.56 -0.3
914,551 - RPSI07_RS03355 0.56 +0.3
914,551 - RPSI07_RS03355 0.56 +1.2
914,589 + RPSI07_RS03355 0.58 +1.3
914,646 + RPSI07_RS03355 0.61 +2.3
914,646 + RPSI07_RS03355 0.61 -2.4
914,646 + RPSI07_RS03355 0.61 +0.3
914,736 + RPSI07_RS03355 0.66 -0.4
914,736 + RPSI07_RS03355 0.66 +0.6
914,736 + RPSI07_RS03355 0.66 +0.5
914,736 + RPSI07_RS03355 0.66 +0.8
914,737 - RPSI07_RS03355 0.66 -0.3
914,766 + RPSI07_RS03355 0.67 -0.0
914,767 - RPSI07_RS03355 0.67 -2.5
914,775 + RPSI07_RS03355 0.68 -0.3
914,775 + RPSI07_RS03355 0.68 -1.4
914,775 + RPSI07_RS03355 0.68 -0.0
914,775 + RPSI07_RS03355 0.68 +0.3
914,776 - RPSI07_RS03355 0.68 -1.7
914,778 + RPSI07_RS03355 0.68 -1.1
914,778 + RPSI07_RS03355 0.68 +1.1
914,778 + RPSI07_RS03355 0.68 +0.1
914,779 - RPSI07_RS03355 0.68 +2.1
914,779 - RPSI07_RS03355 0.68 +0.4
914,779 - RPSI07_RS03355 0.68 -1.0
914,901 + RPSI07_RS03355 0.74 +0.0
914,902 - RPSI07_RS03355 0.74 +1.6
914,902 - RPSI07_RS03355 0.74 -2.2
915,051 + RPSI07_RS03355 0.82 +0.2
915,051 + RPSI07_RS03355 0.82 -0.8
915,051 + RPSI07_RS03355 0.82 -0.0
915,051 + RPSI07_RS03355 0.82 +0.5
915,052 - RPSI07_RS03355 0.82 +1.4
915,180 + RPSI07_RS03355 0.89 -0.1
915,180 + RPSI07_RS03355 0.89 -0.5
915,181 - RPSI07_RS03355 0.89 -0.4
915,181 - RPSI07_RS03355 0.89 +0.4
915,292 - +1.1
915,313 - -0.1
915,392 + -1.7
915,392 + +0.3
915,393 - +0.5
915,393 - -0.2
915,393 - -0.6
915,393 - +2.9
915,393 - -0.9
915,393 - -0.4
915,393 - -0.1
915,557 + RPSI07_RS03360 0.28 -0.4
915,558 - RPSI07_RS03360 0.28 +0.2
915,558 - RPSI07_RS03360 0.28 -0.6
915,558 - RPSI07_RS03360 0.28 -0.1
916,264 + RPSI07_RS03365 0.15 +6.8
916,264 + RPSI07_RS03365 0.15 -0.6
916,265 - RPSI07_RS03365 0.15 +1.4
916,391 - RPSI07_RS03365 0.22 -0.5
916,391 - RPSI07_RS03365 0.22 +0.6
916,391 - RPSI07_RS03365 0.22 -0.3
916,391 - RPSI07_RS03365 0.22 +0.5
916,423 + RPSI07_RS03365 0.23 -0.2
916,424 - RPSI07_RS03365 0.23 -1.7
916,424 - RPSI07_RS03365 0.23 -0.1
916,489 + RPSI07_RS03365 0.27 -1.4
916,939 + RPSI07_RS03365 0.49 -0.7
916,939 + RPSI07_RS03365 0.49 +0.3
916,939 + RPSI07_RS03365 0.49 +0.6
916,939 + RPSI07_RS03365 0.49 +0.0
916,939 + RPSI07_RS03365 0.49 -0.1
916,940 - RPSI07_RS03365 0.49 -0.4
916,940 - RPSI07_RS03365 0.49 +2.3
916,940 - RPSI07_RS03365 0.49 -1.7
916,940 - RPSI07_RS03365 0.49 +0.6

Or see this region's nucleotide sequence