Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS10540

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS10535 and RPSI07_RS10540 are separated by 13 nucleotidesRPSI07_RS10540 and RPSI07_RS10545 are separated by 531 nucleotides RPSI07_RS10535: RPSI07_RS10535 - sensor histidine kinase, at 563,514 to 564,812 _RS10535 RPSI07_RS10540: RPSI07_RS10540 - TonB-denpendent receptor, at 564,826 to 566,925 _RS10540 RPSI07_RS10545: RPSI07_RS10545 - gamma-glutamyltransferase family protein, at 567,457 to 569,325 _RS10545 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -2 -1 0 1 2at 564.577 kb on - strand, within RPSI07_RS10535at 564.769 kb on - strandat 564.769 kb on - strandat 564.769 kb on - strandat 564.769 kb on - strandat 564.953 kb on + strandat 564.954 kb on - strandat 565.034 kb on + strandat 565.075 kb on + strand, within RPSI07_RS10540at 565.075 kb on + strand, within RPSI07_RS10540at 565.075 kb on + strand, within RPSI07_RS10540at 565.076 kb on - strand, within RPSI07_RS10540at 565.076 kb on - strand, within RPSI07_RS10540at 565.076 kb on - strand, within RPSI07_RS10540at 565.076 kb on - strand, within RPSI07_RS10540at 565.076 kb on - strand, within RPSI07_RS10540at 565.113 kb on - strand, within RPSI07_RS10540at 565.196 kb on + strand, within RPSI07_RS10540at 565.196 kb on + strandat 565.196 kb on + strand, within RPSI07_RS10540at 565.197 kb on - strand, within RPSI07_RS10540at 565.197 kb on - strand, within RPSI07_RS10540at 565.197 kb on - strand, within RPSI07_RS10540at 565.280 kb on + strand, within RPSI07_RS10540at 565.280 kb on + strand, within RPSI07_RS10540at 565.280 kb on + strand, within RPSI07_RS10540at 565.281 kb on - strand, within RPSI07_RS10540at 565.462 kb on + strand, within RPSI07_RS10540at 565.463 kb on - strand, within RPSI07_RS10540at 565.614 kb on + strand, within RPSI07_RS10540at 565.614 kb on + strand, within RPSI07_RS10540at 565.614 kb on + strand, within RPSI07_RS10540at 565.615 kb on - strand, within RPSI07_RS10540at 565.615 kb on - strand, within RPSI07_RS10540at 565.736 kb on + strand, within RPSI07_RS10540at 565.737 kb on - strand, within RPSI07_RS10540at 565.784 kb on + strand, within RPSI07_RS10540at 565.976 kb on + strand, within RPSI07_RS10540at 565.976 kb on + strand, within RPSI07_RS10540at 565.976 kb on + strand, within RPSI07_RS10540at 565.977 kb on - strand, within RPSI07_RS10540at 565.977 kb on - strand, within RPSI07_RS10540at 565.977 kb on - strand, within RPSI07_RS10540at 565.977 kb on - strand, within RPSI07_RS10540at 566.018 kb on + strand, within RPSI07_RS10540at 566.019 kb on - strand, within RPSI07_RS10540at 566.078 kb on + strand, within RPSI07_RS10540at 566.078 kb on + strand, within RPSI07_RS10540at 566.238 kb on + strand, within RPSI07_RS10540at 566.238 kb on + strand, within RPSI07_RS10540at 566.239 kb on - strand, within RPSI07_RS10540at 566.319 kb on - strand, within RPSI07_RS10540at 566.378 kb on + strand, within RPSI07_RS10540at 566.426 kb on + strand, within RPSI07_RS10540at 566.427 kb on - strand, within RPSI07_RS10540at 566.427 kb on - strand, within RPSI07_RS10540at 566.427 kb on - strand, within RPSI07_RS10540at 566.477 kb on + strand, within RPSI07_RS10540at 566.477 kb on + strand, within RPSI07_RS10540at 566.478 kb on - strand, within RPSI07_RS10540at 566.478 kb on - strand, within RPSI07_RS10540at 566.492 kb on + strand, within RPSI07_RS10540at 566.492 kb on + strand, within RPSI07_RS10540at 566.492 kb on + strand, within RPSI07_RS10540at 566.541 kb on - strand, within RPSI07_RS10540at 566.541 kb on - strand, within RPSI07_RS10540at 566.639 kb on + strand, within RPSI07_RS10540at 566.640 kb on - strand, within RPSI07_RS10540at 566.753 kb on + strandat 566.753 kb on + strandat 566.754 kb on - strandat 566.967 kb on + strandat 566.967 kb on + strandat 566.967 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.065 kb on + strandat 567.066 kb on - strandat 567.066 kb on - strandat 567.066 kb on - strandat 567.066 kb on - strandat 567.761 kb on + strand, within RPSI07_RS10545at 567.818 kb on - strand, within RPSI07_RS10545at 567.818 kb on - strand, within RPSI07_RS10545at 567.845 kb on - strand, within RPSI07_RS10545

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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564,577 - RPSI07_RS10535 0.82 -0.4
564,769 - +0.9
564,769 - +0.5
564,769 - -0.8
564,769 - -1.4
564,953 + +0.3
564,954 - +0.5
565,034 + +0.1
565,075 + RPSI07_RS10540 0.12 -0.2
565,075 + RPSI07_RS10540 0.12 -0.5
565,075 + RPSI07_RS10540 0.12 -0.5
565,076 - RPSI07_RS10540 0.12 +0.5
565,076 - RPSI07_RS10540 0.12 +0.8
565,076 - RPSI07_RS10540 0.12 +2.5
565,076 - RPSI07_RS10540 0.12 +1.5
565,076 - RPSI07_RS10540 0.12 +2.6
565,113 - RPSI07_RS10540 0.14 +0.5
565,196 + RPSI07_RS10540 0.18 +0.1
565,196 + +2.5
565,196 + RPSI07_RS10540 0.18 +0.0
565,197 - RPSI07_RS10540 0.18 +0.2
565,197 - RPSI07_RS10540 0.18 -1.8
565,197 - RPSI07_RS10540 0.18 -1.0
565,280 + RPSI07_RS10540 0.22 -1.0
565,280 + RPSI07_RS10540 0.22 +1.2
565,280 + RPSI07_RS10540 0.22 -0.8
565,281 - RPSI07_RS10540 0.22 -1.7
565,462 + RPSI07_RS10540 0.30 -1.7
565,463 - RPSI07_RS10540 0.30 -0.1
565,614 + RPSI07_RS10540 0.38 -0.6
565,614 + RPSI07_RS10540 0.38 -1.3
565,614 + RPSI07_RS10540 0.38 +2.5
565,615 - RPSI07_RS10540 0.38 -0.8
565,615 - RPSI07_RS10540 0.38 -1.1
565,736 + RPSI07_RS10540 0.43 +1.7
565,737 - RPSI07_RS10540 0.43 +1.5
565,784 + RPSI07_RS10540 0.46 +0.3
565,976 + RPSI07_RS10540 0.55 -1.4
565,976 + RPSI07_RS10540 0.55 +0.1
565,976 + RPSI07_RS10540 0.55 -0.1
565,977 - RPSI07_RS10540 0.55 +0.6
565,977 - RPSI07_RS10540 0.55 +1.5
565,977 - RPSI07_RS10540 0.55 +0.3
565,977 - RPSI07_RS10540 0.55 -0.5
566,018 + RPSI07_RS10540 0.57 -0.4
566,019 - RPSI07_RS10540 0.57 -0.6
566,078 + RPSI07_RS10540 0.60 +0.4
566,078 + RPSI07_RS10540 0.60 -0.7
566,238 + RPSI07_RS10540 0.67 +0.4
566,238 + RPSI07_RS10540 0.67 +0.2
566,239 - RPSI07_RS10540 0.67 -0.5
566,319 - RPSI07_RS10540 0.71 -0.1
566,378 + RPSI07_RS10540 0.74 -0.1
566,426 + RPSI07_RS10540 0.76 -0.7
566,427 - RPSI07_RS10540 0.76 +2.5
566,427 - RPSI07_RS10540 0.76 -1.3
566,427 - RPSI07_RS10540 0.76 +0.1
566,477 + RPSI07_RS10540 0.79 -1.0
566,477 + RPSI07_RS10540 0.79 +0.3
566,478 - RPSI07_RS10540 0.79 -2.2
566,478 - RPSI07_RS10540 0.79 -0.1
566,492 + RPSI07_RS10540 0.79 -0.3
566,492 + RPSI07_RS10540 0.79 -0.1
566,492 + RPSI07_RS10540 0.79 -0.4
566,541 - RPSI07_RS10540 0.82 -0.2
566,541 - RPSI07_RS10540 0.82 +1.6
566,639 + RPSI07_RS10540 0.86 +0.4
566,640 - RPSI07_RS10540 0.86 +1.5
566,753 + -0.6
566,753 + -0.8
566,754 - +0.6
566,967 + +0.5
566,967 + -1.1
566,967 + -1.9
567,065 + +0.4
567,065 + -1.3
567,065 + -2.4
567,065 + +0.5
567,065 + +1.0
567,066 - +0.3
567,066 - -0.5
567,066 - +1.2
567,066 - -0.3
567,761 + RPSI07_RS10545 0.16 -0.3
567,818 - RPSI07_RS10545 0.19 +0.5
567,818 - RPSI07_RS10545 0.19 -0.1
567,845 - RPSI07_RS10545 0.21 -0.8

Or see this region's nucleotide sequence