Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS08785

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS08775 and RPSI07_RS08780 are separated by 58 nucleotidesRPSI07_RS08780 and RPSI07_RS08785 overlap by 4 nucleotidesRPSI07_RS08785 and RPSI07_RS08790 are separated by 8 nucleotidesRPSI07_RS08790 and RPSI07_RS08795 overlap by 4 nucleotides RPSI07_RS08775: RPSI07_RS08775 - hypothetical protein, at 199,374 to 199,832 _RS08775 RPSI07_RS08780: RPSI07_RS08780 - sulfur oxidation c-type cytochrome SoxA, at 199,891 to 200,664 _RS08780 RPSI07_RS08785: RPSI07_RS08785 - sulfur oxidation c-type cytochrome SoxX, at 200,661 to 201,314 _RS08785 RPSI07_RS08790: RPSI07_RS08790 - TlpA family protein disulfide reductase, at 201,323 to 201,841 _RS08790 RPSI07_RS08795: RPSI07_RS08795 - thiosulfohydrolase SoxB, at 201,838 to 203,553 _RS08795 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 199.818 kb on + strandat 199.830 kb on + strandat 199.933 kb on - strandat 200.098 kb on + strand, within RPSI07_RS08780at 200.098 kb on + strand, within RPSI07_RS08780at 200.098 kb on + strand, within RPSI07_RS08780at 200.099 kb on - strand, within RPSI07_RS08780at 200.116 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.263 kb on + strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.264 kb on - strand, within RPSI07_RS08780at 200.333 kb on - strand, within RPSI07_RS08780at 200.333 kb on - strand, within RPSI07_RS08780at 200.360 kb on - strand, within RPSI07_RS08780at 200.374 kb on + strand, within RPSI07_RS08780at 200.374 kb on + strand, within RPSI07_RS08780at 200.375 kb on - strand, within RPSI07_RS08780at 200.375 kb on - strand, within RPSI07_RS08780at 200.375 kb on - strand, within RPSI07_RS08780at 200.473 kb on + strand, within RPSI07_RS08780at 200.473 kb on + strand, within RPSI07_RS08780at 200.536 kb on + strand, within RPSI07_RS08780at 200.536 kb on + strand, within RPSI07_RS08780at 200.536 kb on + strand, within RPSI07_RS08780at 200.537 kb on - strand, within RPSI07_RS08780at 200.537 kb on - strand, within RPSI07_RS08780at 200.877 kb on + strand, within RPSI07_RS08785at 200.878 kb on - strand, within RPSI07_RS08785at 200.878 kb on - strand, within RPSI07_RS08785at 201.063 kb on + strand, within RPSI07_RS08785at 201.063 kb on + strand, within RPSI07_RS08785at 201.063 kb on + strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.064 kb on - strand, within RPSI07_RS08785at 201.099 kb on + strand, within RPSI07_RS08785at 201.124 kb on - strand, within RPSI07_RS08785at 201.124 kb on - strandat 201.168 kb on + strand, within RPSI07_RS08785at 201.168 kb on + strand, within RPSI07_RS08785at 201.169 kb on - strand, within RPSI07_RS08785at 201.169 kb on - strand, within RPSI07_RS08785at 201.186 kb on + strand, within RPSI07_RS08785at 201.186 kb on + strand, within RPSI07_RS08785at 201.186 kb on + strand, within RPSI07_RS08785at 201.186 kb on + strand, within RPSI07_RS08785at 201.186 kb on + strand, within RPSI07_RS08785at 201.187 kb on - strand, within RPSI07_RS08785at 201.187 kb on - strand, within RPSI07_RS08785at 201.187 kb on - strand, within RPSI07_RS08785at 201.202 kb on - strand, within RPSI07_RS08785at 201.560 kb on + strand, within RPSI07_RS08790at 201.561 kb on - strand, within RPSI07_RS08790at 201.561 kb on - strand, within RPSI07_RS08790at 201.561 kb on - strand, within RPSI07_RS08790at 201.561 kb on - strand, within RPSI07_RS08790at 201.635 kb on + strand, within RPSI07_RS08790at 201.636 kb on - strand, within RPSI07_RS08790at 201.636 kb on - strand, within RPSI07_RS08790at 201.925 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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199,818 + +2.8
199,830 + -0.9
199,933 - -1.1
200,098 + RPSI07_RS08780 0.27 +0.7
200,098 + RPSI07_RS08780 0.27 -1.0
200,098 + RPSI07_RS08780 0.27 -0.8
200,099 - RPSI07_RS08780 0.27 +2.9
200,116 + RPSI07_RS08780 0.29 +0.8
200,263 + RPSI07_RS08780 0.48 -0.9
200,263 + RPSI07_RS08780 0.48 +2.1
200,263 + RPSI07_RS08780 0.48 +0.5
200,263 + RPSI07_RS08780 0.48 -1.5
200,263 + RPSI07_RS08780 0.48 -1.0
200,263 + RPSI07_RS08780 0.48 +1.5
200,263 + RPSI07_RS08780 0.48 +0.3
200,264 - RPSI07_RS08780 0.48 +0.2
200,264 - RPSI07_RS08780 0.48 +0.4
200,264 - RPSI07_RS08780 0.48 +0.3
200,264 - RPSI07_RS08780 0.48 +0.2
200,264 - RPSI07_RS08780 0.48 -1.2
200,264 - RPSI07_RS08780 0.48 -0.2
200,264 - RPSI07_RS08780 0.48 +0.5
200,264 - RPSI07_RS08780 0.48 -0.9
200,264 - RPSI07_RS08780 0.48 -0.6
200,264 - RPSI07_RS08780 0.48 -2.3
200,264 - RPSI07_RS08780 0.48 -0.9
200,264 - RPSI07_RS08780 0.48 -0.0
200,333 - RPSI07_RS08780 0.57 +0.1
200,333 - RPSI07_RS08780 0.57 +0.5
200,360 - RPSI07_RS08780 0.61 -2.5
200,374 + RPSI07_RS08780 0.62 -0.4
200,374 + RPSI07_RS08780 0.62 +2.5
200,375 - RPSI07_RS08780 0.63 -0.3
200,375 - RPSI07_RS08780 0.63 -1.2
200,375 - RPSI07_RS08780 0.63 -1.8
200,473 + RPSI07_RS08780 0.75 +1.7
200,473 + RPSI07_RS08780 0.75 +1.0
200,536 + RPSI07_RS08780 0.83 +0.5
200,536 + RPSI07_RS08780 0.83 +3.0
200,536 + RPSI07_RS08780 0.83 -0.5
200,537 - RPSI07_RS08780 0.83 -1.7
200,537 - RPSI07_RS08780 0.83 -0.6
200,877 + RPSI07_RS08785 0.33 -0.5
200,878 - RPSI07_RS08785 0.33 -0.5
200,878 - RPSI07_RS08785 0.33 -1.4
201,063 + RPSI07_RS08785 0.61 -0.4
201,063 + RPSI07_RS08785 0.61 -1.1
201,063 + RPSI07_RS08785 0.61 -1.1
201,064 - RPSI07_RS08785 0.62 +0.2
201,064 - RPSI07_RS08785 0.62 -0.9
201,064 - RPSI07_RS08785 0.62 -1.7
201,064 - RPSI07_RS08785 0.62 -1.0
201,064 - RPSI07_RS08785 0.62 -1.4
201,064 - RPSI07_RS08785 0.62 +0.3
201,064 - RPSI07_RS08785 0.62 -2.2
201,099 + RPSI07_RS08785 0.67 +0.4
201,124 - RPSI07_RS08785 0.71 -0.9
201,124 - +3.5
201,168 + RPSI07_RS08785 0.78 -0.4
201,168 + RPSI07_RS08785 0.78 -1.2
201,169 - RPSI07_RS08785 0.78 -0.3
201,169 - RPSI07_RS08785 0.78 -0.7
201,186 + RPSI07_RS08785 0.80 +0.9
201,186 + RPSI07_RS08785 0.80 -0.1
201,186 + RPSI07_RS08785 0.80 +1.5
201,186 + RPSI07_RS08785 0.80 +0.5
201,186 + RPSI07_RS08785 0.80 -2.0
201,187 - RPSI07_RS08785 0.80 -0.7
201,187 - RPSI07_RS08785 0.80 -2.0
201,187 - RPSI07_RS08785 0.80 -0.7
201,202 - RPSI07_RS08785 0.83 -1.4
201,560 + RPSI07_RS08790 0.46 -0.9
201,561 - RPSI07_RS08790 0.46 -0.9
201,561 - RPSI07_RS08790 0.46 -0.2
201,561 - RPSI07_RS08790 0.46 +0.7
201,561 - RPSI07_RS08790 0.46 +0.6
201,635 + RPSI07_RS08790 0.60 +0.3
201,636 - RPSI07_RS08790 0.60 +0.3
201,636 - RPSI07_RS08790 0.60 +0.7
201,925 + -1.7

Or see this region's nucleotide sequence