Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS03255

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Penicillin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS03250 and RPSI07_RS03255 are separated by 31 nucleotidesRPSI07_RS03255 and RPSI07_RS03260 are separated by 10 nucleotidesRPSI07_RS03260 and RPSI07_RS03265 overlap by 4 nucleotides RPSI07_RS03250: RPSI07_RS03250 - ABC transporter permease, at 887,665 to 888,582 _RS03250 RPSI07_RS03255: RPSI07_RS03255 - ABC transporter permease, at 888,614 to 889,543 _RS03255 RPSI07_RS03260: RPSI07_RS03260 - ABC transporter ATP-binding protein, at 889,554 to 890,543 _RS03260 RPSI07_RS03265: RPSI07_RS03265 - ABC transporter ATP-binding protein, at 890,540 to 891,397 _RS03265 Position (kb) 888 889 890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 887.674 kb on + strandat 887.674 kb on + strandat 887.674 kb on + strandat 887.674 kb on + strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.675 kb on - strandat 887.825 kb on - strand, within RPSI07_RS03250at 887.854 kb on + strand, within RPSI07_RS03250at 887.855 kb on - strand, within RPSI07_RS03250at 888.028 kb on + strand, within RPSI07_RS03250at 888.205 kb on + strand, within RPSI07_RS03250at 888.205 kb on + strand, within RPSI07_RS03250at 888.206 kb on - strand, within RPSI07_RS03250at 888.208 kb on + strand, within RPSI07_RS03250at 888.208 kb on + strand, within RPSI07_RS03250at 888.271 kb on + strand, within RPSI07_RS03250at 888.271 kb on + strand, within RPSI07_RS03250at 888.272 kb on - strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.418 kb on + strand, within RPSI07_RS03250at 888.419 kb on - strand, within RPSI07_RS03250at 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.514 kb on + strandat 888.515 kb on - strandat 888.515 kb on - strandat 888.728 kb on + strand, within RPSI07_RS03255at 888.728 kb on + strand, within RPSI07_RS03255at 888.812 kb on + strand, within RPSI07_RS03255at 888.813 kb on - strand, within RPSI07_RS03255at 888.908 kb on + strand, within RPSI07_RS03255at 888.908 kb on + strand, within RPSI07_RS03255at 889.013 kb on + strand, within RPSI07_RS03255at 889.046 kb on + strand, within RPSI07_RS03255at 889.046 kb on + strand, within RPSI07_RS03255at 889.046 kb on + strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.047 kb on - strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.253 kb on + strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.254 kb on - strand, within RPSI07_RS03255at 889.279 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.421 kb on + strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.422 kb on - strand, within RPSI07_RS03255at 889.872 kb on + strand, within RPSI07_RS03260at 889.872 kb on + strand, within RPSI07_RS03260at 889.872 kb on + strand, within RPSI07_RS03260at 889.873 kb on - strand, within RPSI07_RS03260at 889.953 kb on + strand, within RPSI07_RS03260at 889.954 kb on - strand, within RPSI07_RS03260at 890.238 kb on + strand, within RPSI07_RS03260at 890.238 kb on + strand, within RPSI07_RS03260at 890.301 kb on + strand, within RPSI07_RS03260at 890.301 kb on + strand, within RPSI07_RS03260

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
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887,674 + -0.2
887,674 + -1.1
887,674 + +0.6
887,674 + -0.1
887,675 - +0.6
887,675 - -2.0
887,675 - -0.6
887,675 - -0.6
887,675 - +0.3
887,675 - +0.7
887,675 - -1.3
887,675 - -0.5
887,825 - RPSI07_RS03250 0.17 -0.7
887,854 + RPSI07_RS03250 0.21 +1.7
887,855 - RPSI07_RS03250 0.21 +1.3
888,028 + RPSI07_RS03250 0.40 -0.0
888,205 + RPSI07_RS03250 0.59 +1.3
888,205 + RPSI07_RS03250 0.59 -0.9
888,206 - RPSI07_RS03250 0.59 +0.8
888,208 + RPSI07_RS03250 0.59 +1.0
888,208 + RPSI07_RS03250 0.59 +1.5
888,271 + RPSI07_RS03250 0.66 +0.1
888,271 + RPSI07_RS03250 0.66 -0.7
888,272 - RPSI07_RS03250 0.66 -1.3
888,418 + RPSI07_RS03250 0.82 -0.6
888,418 + RPSI07_RS03250 0.82 +0.2
888,418 + RPSI07_RS03250 0.82 +0.0
888,418 + RPSI07_RS03250 0.82 -0.6
888,419 - RPSI07_RS03250 0.82 -0.1
888,514 + +0.0
888,514 + -1.4
888,514 + -0.7
888,514 + -1.2
888,514 + -0.3
888,514 + -1.7
888,514 + +0.4
888,514 + -2.9
888,515 - +1.0
888,515 - -0.7
888,728 + RPSI07_RS03255 0.12 +0.8
888,728 + RPSI07_RS03255 0.12 -0.1
888,812 + RPSI07_RS03255 0.21 +0.9
888,813 - RPSI07_RS03255 0.21 -0.3
888,908 + RPSI07_RS03255 0.32 +1.5
888,908 + RPSI07_RS03255 0.32 -0.9
889,013 + RPSI07_RS03255 0.43 +0.4
889,046 + RPSI07_RS03255 0.46 -2.5
889,046 + RPSI07_RS03255 0.46 -1.0
889,046 + RPSI07_RS03255 0.46 +1.0
889,047 - RPSI07_RS03255 0.47 +0.3
889,047 - RPSI07_RS03255 0.47 -0.8
889,047 - RPSI07_RS03255 0.47 -0.4
889,047 - RPSI07_RS03255 0.47 -2.9
889,047 - RPSI07_RS03255 0.47 +0.0
889,047 - RPSI07_RS03255 0.47 -1.6
889,047 - RPSI07_RS03255 0.47 -1.3
889,253 + RPSI07_RS03255 0.69 +0.5
889,253 + RPSI07_RS03255 0.69 -2.6
889,253 + RPSI07_RS03255 0.69 -0.6
889,253 + RPSI07_RS03255 0.69 -0.3
889,254 - RPSI07_RS03255 0.69 +1.0
889,254 - RPSI07_RS03255 0.69 +0.4
889,254 - RPSI07_RS03255 0.69 -0.5
889,254 - RPSI07_RS03255 0.69 +0.5
889,254 - RPSI07_RS03255 0.69 +1.2
889,279 + RPSI07_RS03255 0.72 +1.8
889,421 + RPSI07_RS03255 0.87 -0.1
889,421 + RPSI07_RS03255 0.87 -0.6
889,421 + RPSI07_RS03255 0.87 +1.0
889,421 + RPSI07_RS03255 0.87 +0.3
889,421 + RPSI07_RS03255 0.87 +0.2
889,421 + RPSI07_RS03255 0.87 -0.2
889,421 + RPSI07_RS03255 0.87 -1.5
889,422 - RPSI07_RS03255 0.87 +1.0
889,422 - RPSI07_RS03255 0.87 -1.4
889,422 - RPSI07_RS03255 0.87 +1.0
889,422 - RPSI07_RS03255 0.87 -0.1
889,422 - RPSI07_RS03255 0.87 -1.2
889,872 + RPSI07_RS03260 0.32 -0.1
889,872 + RPSI07_RS03260 0.32 -0.8
889,872 + RPSI07_RS03260 0.32 +0.7
889,873 - RPSI07_RS03260 0.32 +1.0
889,953 + RPSI07_RS03260 0.40 +2.0
889,954 - RPSI07_RS03260 0.40 -0.8
890,238 + RPSI07_RS03260 0.69 +0.8
890,238 + RPSI07_RS03260 0.69 +0.3
890,301 + RPSI07_RS03260 0.75 -0.4
890,301 + RPSI07_RS03260 0.75 -2.0

Or see this region's nucleotide sequence