Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS12320

Experiment: SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS12310 and RPSI07_RS12315 are separated by 35 nucleotidesRPSI07_RS12315 and RPSI07_RS12320 are separated by 64 nucleotidesRPSI07_RS12320 and RPSI07_RS12325 are separated by 181 nucleotides RPSI07_RS12310: RPSI07_RS12310 - hypothetical protein, at 957,919 to 958,725 _RS12310 RPSI07_RS12315: RPSI07_RS12315 - arogenate dehydratase, at 958,761 to 959,564 _RS12315 RPSI07_RS12320: RPSI07_RS12320 - hypothetical protein, at 959,629 to 960,021 _RS12320 RPSI07_RS12325: RPSI07_RS12325 - signal peptidase, at 960,203 to 961,219 _RS12325 Position (kb) 959 960 961Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 958.891 kb on + strand, within RPSI07_RS12315at 958.891 kb on + strand, within RPSI07_RS12315at 958.891 kb on + strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 958.892 kb on - strand, within RPSI07_RS12315at 959.044 kb on + strand, within RPSI07_RS12315at 959.044 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.218 kb on + strand, within RPSI07_RS12315at 959.219 kb on - strand, within RPSI07_RS12315at 959.219 kb on - strand, within RPSI07_RS12315at 959.413 kb on + strand, within RPSI07_RS12315at 959.413 kb on + strand, within RPSI07_RS12315at 959.414 kb on - strand, within RPSI07_RS12315at 959.428 kb on + strand, within RPSI07_RS12315at 959.428 kb on + strand, within RPSI07_RS12315at 959.564 kb on + strandat 959.564 kb on + strandat 959.564 kb on + strandat 959.565 kb on - strandat 959.565 kb on - strandat 959.565 kb on - strandat 959.565 kb on - strandat 959.630 kb on + strandat 959.630 kb on + strandat 959.631 kb on - strandat 959.631 kb on - strandat 959.816 kb on + strand, within RPSI07_RS12320at 959.816 kb on + strand, within RPSI07_RS12320at 959.816 kb on + strand, within RPSI07_RS12320at 959.817 kb on - strand, within RPSI07_RS12320at 959.817 kb on - strand, within RPSI07_RS12320at 959.908 kb on + strand, within RPSI07_RS12320at 959.908 kb on + strand, within RPSI07_RS12320at 959.909 kb on - strandat 959.909 kb on - strand, within RPSI07_RS12320at 959.917 kb on - strand, within RPSI07_RS12320at 960.056 kb on - strandat 960.126 kb on - strandat 960.187 kb on - strandat 960.187 kb on - strandat 960.323 kb on + strand, within RPSI07_RS12325at 960.324 kb on - strand, within RPSI07_RS12325at 960.416 kb on + strand, within RPSI07_RS12325at 960.416 kb on + strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.417 kb on - strand, within RPSI07_RS12325at 960.605 kb on + strand, within RPSI07_RS12325at 960.605 kb on + strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.606 kb on - strand, within RPSI07_RS12325at 960.643 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.644 kb on + strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.645 kb on - strand, within RPSI07_RS12325at 960.732 kb on - strand, within RPSI07_RS12325at 960.732 kb on - strand, within RPSI07_RS12325at 960.826 kb on + strand, within RPSI07_RS12325at 960.826 kb on + strand, within RPSI07_RS12325at 960.827 kb on - strand, within RPSI07_RS12325at 960.827 kb on - strand, within RPSI07_RS12325at 960.909 kb on - strand, within RPSI07_RS12325at 960.950 kb on + strand, within RPSI07_RS12325at 960.951 kb on - strand, within RPSI07_RS12325at 960.951 kb on - strand, within RPSI07_RS12325

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Per-strain Table

Position Strand Gene LocusTag Fraction SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
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958,891 + RPSI07_RS12315 0.16 -1.5
958,891 + RPSI07_RS12315 0.16 +1.4
958,891 + RPSI07_RS12315 0.16 -2.4
958,892 - RPSI07_RS12315 0.16 +0.5
958,892 - RPSI07_RS12315 0.16 -1.8
958,892 - RPSI07_RS12315 0.16 +0.4
958,892 - RPSI07_RS12315 0.16 +2.0
959,044 + RPSI07_RS12315 0.35 +1.9
959,044 + RPSI07_RS12315 0.35 +0.9
959,218 + RPSI07_RS12315 0.57 -1.1
959,218 + RPSI07_RS12315 0.57 -2.1
959,218 + RPSI07_RS12315 0.57 -0.1
959,218 + RPSI07_RS12315 0.57 +0.6
959,219 - RPSI07_RS12315 0.57 +0.2
959,219 - RPSI07_RS12315 0.57 -2.5
959,413 + RPSI07_RS12315 0.81 +0.2
959,413 + RPSI07_RS12315 0.81 -0.1
959,414 - RPSI07_RS12315 0.81 +2.1
959,428 + RPSI07_RS12315 0.83 -0.4
959,428 + RPSI07_RS12315 0.83 -0.5
959,564 + +0.2
959,564 + -0.0
959,564 + -0.5
959,565 - -1.0
959,565 - +0.5
959,565 - -0.6
959,565 - -1.3
959,630 + +0.2
959,630 + +0.2
959,631 - +0.4
959,631 - +0.2
959,816 + RPSI07_RS12320 0.48 -0.1
959,816 + RPSI07_RS12320 0.48 +1.2
959,816 + RPSI07_RS12320 0.48 +1.4
959,817 - RPSI07_RS12320 0.48 -0.6
959,817 - RPSI07_RS12320 0.48 -0.2
959,908 + RPSI07_RS12320 0.71 +0.3
959,908 + RPSI07_RS12320 0.71 +4.0
959,909 - +2.2
959,909 - RPSI07_RS12320 0.71 +0.6
959,917 - RPSI07_RS12320 0.73 -1.2
960,056 - -1.7
960,126 - -0.4
960,187 - +0.8
960,187 - -1.5
960,323 + RPSI07_RS12325 0.12 -2.1
960,324 - RPSI07_RS12325 0.12 -0.7
960,416 + RPSI07_RS12325 0.21 +1.1
960,416 + RPSI07_RS12325 0.21 +0.2
960,417 - RPSI07_RS12325 0.21 +0.3
960,417 - RPSI07_RS12325 0.21 +0.6
960,417 - RPSI07_RS12325 0.21 -2.0
960,417 - RPSI07_RS12325 0.21 -0.9
960,605 + RPSI07_RS12325 0.40 -0.1
960,605 + RPSI07_RS12325 0.40 +2.2
960,606 - RPSI07_RS12325 0.40 +1.6
960,606 - RPSI07_RS12325 0.40 +1.2
960,606 - RPSI07_RS12325 0.40 +1.5
960,606 - RPSI07_RS12325 0.40 -1.2
960,643 + RPSI07_RS12325 0.43 +0.9
960,644 + RPSI07_RS12325 0.43 +0.1
960,644 + RPSI07_RS12325 0.43 +0.4
960,644 + RPSI07_RS12325 0.43 -0.6
960,644 + RPSI07_RS12325 0.43 -0.7
960,644 + RPSI07_RS12325 0.43 -0.8
960,644 + RPSI07_RS12325 0.43 -1.6
960,645 - RPSI07_RS12325 0.43 +0.6
960,645 - RPSI07_RS12325 0.43 +1.3
960,645 - RPSI07_RS12325 0.43 +0.9
960,645 - RPSI07_RS12325 0.43 -1.1
960,645 - RPSI07_RS12325 0.43 -1.3
960,645 - RPSI07_RS12325 0.43 -1.6
960,645 - RPSI07_RS12325 0.43 +0.1
960,645 - RPSI07_RS12325 0.43 +0.3
960,645 - RPSI07_RS12325 0.43 +0.3
960,732 - RPSI07_RS12325 0.52 +1.2
960,732 - RPSI07_RS12325 0.52 +0.6
960,826 + RPSI07_RS12325 0.61 -1.1
960,826 + RPSI07_RS12325 0.61 -0.5
960,827 - RPSI07_RS12325 0.61 +0.2
960,827 - RPSI07_RS12325 0.61 -1.4
960,909 - RPSI07_RS12325 0.69 -0.4
960,950 + RPSI07_RS12325 0.73 -1.1
960,951 - RPSI07_RS12325 0.74 +1.8
960,951 - RPSI07_RS12325 0.74 +1.2

Or see this region's nucleotide sequence